Browse Element(s) Details


Os.10166.1.S1_at

Description gb:AB096140.1
DB_XREF= gi:30793456
GEN=chia4a
TID=Os.10166.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10166 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) chia4a mRNA for chitinase, complete cds.
PROD=chitinase
FL= gb:AK104426.1 gb:AK071013.1 gb:AK104242.1 gb:AB096140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4168011/11Endochitinase A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41599Os.14491.2.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41599Os.47463.1.S1_x_at2/114+24456230..24466281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41620Os.7991.1.S1_at11/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41620Os.36593.2.S1_x_at1/114+24468615..24470213Endochitinase A precursor, putative, expressed
LOC_Os04g41630OsAffx.15880.1.S1_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.15880.1.S1_s_at11/114+24472435..24473094hypothetical protein
LOC_Os04g41630OsAffx.31575.1.S1_x_at1/114+24472435..24473094hypothetical protein
LOC_Os04g41640NANA4+24473621..24474222Chitin recognition protein, expressed
LOC_Os04g41650OsAffx.7362.1.S1_x_at1/114+24477559..24478422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41660NANA4+24481120..24483194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.2.S1_s_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.1.S1_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41680Os.10166.1.S1_at11/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.51172.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.2692.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class
LOC_Os04g41700Os.10085.1.S1_at11/114+24500516..24503611expressed protein
LOC_Os04g41710Os.50694.1.S1_at11/114+24506812..24509613expressed protein
LOC_Os04g41720OsAffx.15708.1.S1_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41720OsAffx.18103.1.S1_x_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10166.1.S1_at--497--7571Chr04:24490182..24490206 (25 bp)
GGGCGAGCATGGACTACTGCGACAA
LOC_Os04g41680
Os.10166.1.S1_at--499--9911Chr04:24489850..24489874 (25 bp)
TACTGCCGCCAATTCGGCGTTGACC
LOC_Os04g41680
Os.10166.1.S1_at--1130--7211Chr04:24489830..24489854 (25 bp)
TGACCCGGGTGGCAACCTTTACTGT
LOC_Os04g41680
Os.10166.1.S1_at--442--1971Chr04:24489810..24489834 (25 bp)
ACTGTTGAGTTACATGCACACATGC
LOC_Os04g41680
Os.10166.1.S1_at--846--1211Chr04:24489803..24489827 (25 bp)
AGTTACATGCACACATGCTGCGCGG
LOC_Os04g41680
Os.10166.1.S1_at--430--611Chr04:24489789..24489813 (25 bp)
ATGCTGCGCGGCTCATCGATCAGGA
LOC_Os04g41680
Os.10166.1.S1_at--700--4671Chr04:24489782..24489806 (25 bp)
GCGGCTCATCGATCAGGACTGAATA
LOC_Os04g41680
Os.10166.1.S1_at--788--8611Chr04:24489728..24489752 (25 bp)
TGGTGTGTACGTACATTGCATGCAC
LOC_Os04g41680
Os.10166.1.S1_at--155--9891Chr04:24489717..24489741 (25 bp)
TACATTGCATGCACGTACGGTACAT
LOC_Os04g41680
Os.10166.1.S1_at--1162--1791Chr04:24489705..24489729 (25 bp)
ACGTACGGTACATGTTGCAAGTGAC
LOC_Os04g41680
Os.10166.1.S1_at--182--7351Chr04:24489685..24489709 (25 bp)
GTGACGTCAAGAGTTTGGTACGGAT
LOC_Os04g41680
Target Sequence 
GGGCGAGCATGGACTACTGCGACAAGAACAACAAGCAGTGGCCGTGCCAGCCGGGGAAGAAGTACTACGGGCGCGGGCCG
CTGCAGATCTCGTGGAACTACAACTACGGGCCTGCGGGGCAGAACATCGGGTTCGACGGGCTGAGGGACCCGGACAGGGT
GGCGCAGGACCCGACGATCTCCTTCAAGACGGCGCTCTGGTTCTGGATGAACAACGTGCACCAGGTGATGTTGCAGGGGT
TCGGCGCCACCATCCGGGCCATCAACGGTGCGCTCGAGTGCAACGGCAAGAACCCCGGCGCCGTCAACGCAAGGGTAAAC
TACTACAAAGACTACTGCCGCCAATTCGGCGTTGACCCGGGTGGCAACCTTTACTGTTGAGTTACATGCACACATGCTGC
GCGGCTCATCGATCAGGACTGAATAATAAACAAAGTAATAACGAATAAAACGTTTGGTGTGTACGTACATTGCATGCACG
TACGGTACATGTTGCAAGTGACGTCAAGAGTTTGGTACGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis