Browse Element(s) Details


Os.10085.1.S1_at

Description gb:AK109703.1
DB_XREF= gi:32994912
TID=Os.10085.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F10, full insert sequence.
FL= gb:AK109703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4170011/11expressed protein
LOC_Os08g085861/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41650OsAffx.7362.1.S1_x_at1/114+24477559..24478422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41660NANA4+24481120..24483194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.2.S1_s_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.1.S1_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41680Os.10166.1.S1_at11/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.51172.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.2692.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class
LOC_Os04g41700Os.10085.1.S1_at11/114+24500516..24503611expressed protein
LOC_Os04g41710Os.50694.1.S1_at11/114+24506812..24509613expressed protein
LOC_Os04g41720OsAffx.15708.1.S1_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41720OsAffx.18103.1.S1_x_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10085.1.S1_at--1101--6871Chr04:24501026..24501050 (25 bp)
GTATTTCTTGTTATACTGTTTGGAA
LOC_Os04g41700
Os.10085.1.S1_at--775--10571Chr04:24500852..24500876 (25 bp)
TTCTATTATTTCTATCCCTTCTAAT
LOC_Os04g41700
Os.10085.1.S1_at--93--231Chr04:24500823..24500847 (25 bp)
ATATTGTATGTCTTGCTGGCTTGCG
LOC_Os04g41700
Os.10085.1.S1_at--1059--2391Chr04:24500750..24500774 (25 bp)
AAAAAGGCGGGACAATCAGACTGCT
LOC_Os04g41700
Os.10085.1.S1_at--990--391Chr04:24500736..24500760 (25 bp)
ATCAGACTGCTGGACGGATAGAAAA
LOC_Os04g41700
Os.10085.1.S1_at--343--1431Chr04:24500706..24500730 (25 bp)
AGAAAAGCGACCGAACTCCTGAACG
LOC_Os04g41700
Os.10085.1.S1_at--898--5511Chr04:24500666..24500690 (25 bp)
GAAAAGCTCCTACCGGACTAATGGA
LOC_Os04g41700
Os.10085.1.S1_at--368--10031Chr04:24500619..24500643 (25 bp)
TAGAAAGGTGGCTTGATGTCTTAGA
LOC_Os04g41700
Os.10085.1.S1_at--612--6193Chr08:4960189..4960230 (25 bp)
GAGGAAGAGCCTTGTCTGCTTCTAT
LOC_Os08g08586
Os.10085.1.S1_at--233--4451Chr04:24500588..24500612 (25 bp)
GCCTTGTCTGCTTCTATCATTTATA
LOC_Os04g41700
Os.10085.1.S1_at--478--4911Chr04:24500579..24500603 (25 bp)
GCTTCTATCATTTATATTGCTTGTA
LOC_Os04g41700
Target Sequence 
GTATTTCTTGTTATACTGTTTGGAAGAGTATCACATTAACATATTTGAATCTCATAAANNNAATGNNNNTGNAANNNNNN
NNAGGGTTGACTTCAATGATAACCTGGAGATAATGATTGGAGGTGATTTNNNNNCCTACAGGAAGAGACTTNGCGATCTG
TATTTTCTTGTGTNCTTCTATTATTTCTATCCCTTCTAATAATAATATTGTATGTCTTGCTGGCTTGCGAGAGAAATATG
TAAAATCATGTTAGTGGGAGTGCTAAAAATAGTGGAAAAAAAGGCGGGACAATCAGACTGCTGGACGGATAGAAAAGGAA
AAGAAAAGCGACCGAACTCCTGAACGGAAAGAAAAGGGAAAGAAAAGCTCCTACCGGACTAATGGACTGCNATCTTTTTA
TTGCCTGATAGAAAGGTGGCTTGATGTCTTAGAGGAAGAGCCTTGTCTGCTTCTATCATTTATATTGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis