Browse Element(s) Details


Os.50694.1.S1_at

Description gb:AK110895.1
DB_XREF= gi:32996104
TID=Os.50694.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence.
FL= gb:AK110895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41660NANA4+24481120..24483194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.2.S1_s_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41670OsAffx.23366.1.S1_at1/114+24485575..24489201transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g41680Os.10166.1.S1_at11/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.51172.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41680Os.2692.1.S1_x_at1/114+24489647..24490816Endochitinase A precursor, putative, expressed
LOC_Os04g41690Os.41695.4.S1_x_at2/114+24493381..24497888transposon protein, putative, Mutator sub-class
LOC_Os04g41700Os.10085.1.S1_at11/114+24500516..24503611expressed protein
LOC_Os04g41710Os.50694.1.S1_at11/114+24506812..24509613expressed protein
LOC_Os04g41720OsAffx.15708.1.S1_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41720OsAffx.18103.1.S1_x_at1/114+24512336..24513832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g41730NANA4+24515246..24518901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g41740Os.5967.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740Os.53420.1.S1_x_at11/114+24521624..24523542expressed protein
LOC_Os04g41740OsAffx.22502.1.S1_x_at4/114+24521624..24523542expressed protein
LOC_Os04g41750Os.53681.1.S1_at11/114+24525605..24527470expressed protein
LOC_Os04g41750Os.53420.1.S1_x_at1/114+24525605..24527470expressed protein
LOC_Os04g41770OsAffx.26419.1.S1_at11/114+24531688..24533968expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50694.1.S1_at--565--4351Chr04:24509111..24509135 (25 bp)
CCAGCGACGGTTGCGTGGGTTCCAT
LOC_Os04g41710
Os.50694.1.S1_at--235--7711Chr04:24509161..24509185 (25 bp)
GGGTGCACGACCGTGACGTACAGCT
LOC_Os04g41710
Os.50694.1.S1_at--464--7351Chr04:24509173..24509197 (25 bp)
GTGACGTACAGCTCCCAGGGCACGG
LOC_Os04g41710
Os.50694.1.S1_at--507--7491Chr04:24509251..24509275 (25 bp)
GTGGTGTTCGTCAGCTCGACGTACA
LOC_Os04g41710
Os.50694.1.S1_at--1155--4791Chr04:24509264..24509288 (25 bp)
GCTCGACGTACATCACCAAGTGGGA
LOC_Os04g41710
Os.50694.1.S1_at--790--4791Chr04:24509325..24509349 (25 bp)
GCTCGTGTGCGTGTCCCAGCAGCAG
LOC_Os04g41710
Os.50694.1.S1_at--753--4911Chr04:24509367..24509391 (25 bp)
GCTTCGTCTCTGAAATGTTGCGCTA
LOC_Os04g41710
Os.50694.1.S1_at--27--731Chr04:24509381..24509405 (25 bp)
ATGTTGCGCTACACGGAGCAGTTCG
LOC_Os04g41710
Os.50694.1.S1_at--512--1231Chr04:24509400..24509424 (25 bp)
AGTTCGCGGCCGGTCACATGTACTC
LOC_Os04g41710
Os.50694.1.S1_at--672--3311Chr04:24509414..24509438 (25 bp)
CACATGTACTCGCATGGCGCGTTGG
LOC_Os04g41710
Os.50694.1.S1_at--1132--8631Chr04:24509452..24509476 (25 bp)
TGGGAGTAGCAGTCGACCTTTCTTC
LOC_Os04g41710
Target Sequence 
CCAGCGACGGTTGCGTGGGTTCCATGCAGGTGAAAGGGTACGCGGGTCAGGGGTGCACGACCGTGACGTACAGCTCCCAG
GGCACGGGCGGGCACACCCGCGCGTCGCTGGAGTTCGCCGCCGTCGCGAACACCACGCGGGTGGTGTTCGTCAGCTCGAC
GTACATCACCAAGTGGGACGGGACGCTGTGCGGGCCCGTCGTCGACGACGCCTCGCTCGTGTGCGTGTCCCAGCAGCAGC
CGCCCGCTCGCCGCCTGCTTCGTCTCTGAAATGTTGCGCTACACGGAGCAGTTCGCGGCCGGTCACATGTACTCGCATGG
CGCGTTGGAATGTGACTGTGCTGGGAGTAGCAGTCGACCTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis