Browse Element(s) Details


Os.12371.1.S1_at

Description gb:AK066522.1
DB_XREF= gi:32976540
TID=Os.12371.1
CNT=58
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072G15, full insert sequence.
FL= gb:AK105071.1 gb:AK104854.1 gb:AK064835.1 gb:AK066522.1 gb:AK072104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4134011/11phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41290OsAffx.4048.1.S1_x_at11/114+24282957..24286302ankyrin repeat family protein, putative, expressed
LOC_Os04g41300Os.17994.1.S1_at11/114+24286449..24289301ribosome recycling factor family protein, expressed
LOC_Os04g41310Os.52201.1.S1_at11/114+24293448..24296672Protein kinase domain containing protein, expressed
LOC_Os04g41320NANA4+24296668..24301694nucleotide-sugar transporter family protein, putative
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0008967molecular_functionphosphoglycolate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12371.1.S1_at--62--1071Chr04:24309720..24309744 (25 bp)
AGGGTGCCTTTTCATTGCCACAAAC
LOC_Os04g41340
Os.12371.1.S1_at--951--2211Chr04:24309531..24309555 (25 bp)
ACAAGAACCGCTCGTTGTCGGGAAG
LOC_Os04g41340
Os.12371.1.S1_at--982--7191Chr04:24309515..24309539 (25 bp)
GTCGGGAAGCCGTCAACATTCATGA
LOC_Os04g41340
Os.12371.1.S1_at--136--6631Chr04:24309328..24309352 (25 bp)
GTTGGTGACCGTTTGGATACCGACA
LOC_Os04g41340
Os.12371.1.S1_at--378--6491Chr04:24309313..24309337 (25 bp)
GATACCGACATCTTGTTTGGCCAAA
LOC_Os04g41340
Os.12371.1.S1_at--908--2411Chr04:24309278..24309301 (24 bp)
AAAACTCTTCTGGTCCTTTCAGGTG
LOC_Os04g41340
Os.12371.1.S1_at--927--9631Chr04:24309171..24309194 (24 bp)
TCAGGTGTCACTTCTGTACAGATGC
LOC_Os04g41340
Os.12371.1.S1_at--744--2251Chr04:24309101..24309125 (25 bp)
AAATTTCTGATTTTCTCACCCTCAA
LOC_Os04g41340
Os.12371.1.S1_at--49--6231Chr04:24309028..24309052 (25 bp)
GAGGCCCCTTACTTTTGTATAGGCG
LOC_Os04g41340
Os.12371.1.S1_at--670--8351Chr04:24309007..24309031 (25 bp)
GGCGGCATCCGCCAATTTTTAGCAA
LOC_Os04g41340
Os.12371.1.S1_at--155--2911Chr04:24308972..24308996 (25 bp)
AAGGATGCTTTTTCTTTCCACATTG
LOC_Os04g41340
Target Sequence 
AGGGTGCCTTTTCATTGCCACAAACCGGGACGCCGTCACCCATCTTACTGATGCCCAAGAGTGGGCAGGTGGAGGGTCAA
TGGTTGGTGCAATTCTTGGTTCAACTAAACAAGAACCGCTCGTTGTCGGGAAGCCGTCAACATTCATGATGGACTACCTG
GCAAAGAAGTTTGGGATCACAACATCCCAGATATGCATGGTTGGTGACCGTTTGGATACCGACATCTTGTTTGGCCAAAA
CGGAGGNTGCAAAACTCTTCTGGTCCTTTCAGGTGTCACTTCTGTACAGATGCTTCAGAGCCCTGACAACTCGATCCAGC
CAGATTTCTACACAAACCAAATTTCTGATTTTCTCACCCTCAAAGCAGCAACTGTCTGAAGAAATGGGAAGTAAATGTGT
TACAGATGGGCGAGGCCCCTTACTTTTGTATAGGCGGCATCCGCCAATTTTTAGCAACTAAGGTCACAAGGATGCTTTTT
CTTTCCACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis