Browse Element(s) Details


Os.9374.1.S1_at

Description gb:AK071251.1
DB_XREF= gi:32981274
TID=Os.9374.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087H21, full insert sequence.
FL= gb:AK104317.1 gb:AK071251.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4829011/11Thioredoxin reductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed
LOC_Os02g48300OsAffx.24780.1.S1_at11/112+29549773..29551847F-box domain containing protein
LOC_Os02g48310NANA2+29556250..29559068hAT family dimerisation domain containing protein
LOC_Os02g48320OsAffx.24782.1.S1_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48320OsAffx.24782.1.S1_s_at11/112+29565978..29567500DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9374.1.S1_at--526--411Chr02:29547922..29547944 (23 bp)
ATCAGGGTGCATGGCTGCTTTGGAC
LOC_Os02g48290
Os.9374.1.S1_at--756--5171Chr02:29547982..29548006 (25 bp)
GCAAGGCCGATTGACTATCTCAGGA
LOC_Os02g48290
Os.9374.1.S1_at--944--2651Chr02:29548009..29548033 (25 bp)
AAGCGACCACCAGCGTTTCAAGAAG
LOC_Os02g48290
Os.9374.1.S1_at--975--2731Chr02:29548028..29548052 (25 bp)
AAGAAGTCCAACGTTGTCGCTGCTG
LOC_Os02g48290
Os.9374.1.S1_at--477--7231Chr02:29548043..29548067 (25 bp)
GTCGCTGCTGAAAGCTACACTCTGA
LOC_Os02g48290
Os.9374.1.S1_at--838--1991Chr02:29548061..29548085 (25 bp)
ACTCTGAACGTTTATGCCATGGGCT
LOC_Os02g48290
Os.9374.1.S1_at--396--4431Chr02:29548076..29548100 (25 bp)
GCCATGGGCTGTTCTGACTTCTGAA
LOC_Os02g48290
Os.9374.1.S1_at--36--5691Chr02:29548091..29548115 (25 bp)
GACTTCTGAATGCTTCTACCGGATT
LOC_Os02g48290
Os.9374.1.S1_at--766--3811Chr02:29548119..29548143 (25 bp)
CTGCCCCTTATTAGCGTCGTATTAT
LOC_Os02g48290
Os.9374.1.S1_at--919--5771Chr02:29548180..29548204 (25 bp)
GACGACGTATTGCTTGCGGGTATCC
LOC_Os02g48290
Os.9374.1.S1_at--613--6911Chr02:29548199..29548223 (25 bp)
GTATCCGCATTTTCTGCATTTGCTT
LOC_Os02g48290
Target Sequence 
ATCAGGGTGCATGGCTGCTTTGGACGCGGAGCACTATCTGCAGGAGGTCGGTGCACAGGAGGGCAAGGCCGATTGACTAT
CTCAGGAGGAAGCGACCACCAGCGTTTCAAGAAGTCCAACGTTGTCGCTGCTGAAAGCTACACTCTGAACGTTTATGCCA
TGGGCTGTTCTGACTTCTGAATGCTTCTACCGGATTTTCCTGCCCCTTATTAGCGTCGTATTATTTGATGTGCTGGAGAT
TTATCTGTATTTACGCTGAAGACGACGTATTGCTTGCGGGTATCCGCATTTTCTGCATTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis