Browse Element(s) Details


OsAffx.24782.1.S1_at

Description tigr:9630.m04710
TID=OsAffx.24782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4832011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed
LOC_Os02g48300OsAffx.24780.1.S1_at11/112+29549773..29551847F-box domain containing protein
LOC_Os02g48310NANA2+29556250..29559068hAT family dimerisation domain containing protein
LOC_Os02g48320OsAffx.24782.1.S1_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48320OsAffx.24782.1.S1_s_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24782.1.S1_at--464--1491Chr02:29566679..29566703 (25 bp)
AGCACAAGATCAAGTGGCACAATCA
LOC_Os02g48320
OsAffx.24782.1.S1_at--728--1271Chr02:29566673..29566697 (25 bp)
AGATCAAGTGGCACAATCAGCTGGA
LOC_Os02g48320
OsAffx.24782.1.S1_at--103--9731Chr02:29566670..29566694 (25 bp)
TCAAGTGGCACAATCAGCTGGACCC
LOC_Os02g48320
OsAffx.24782.1.S1_at--518--8371Chr02:29566628..29566652 (25 bp)
GGCGTCACAGTCCTCCGGCGTGACA
LOC_Os02g48320
OsAffx.24782.1.S1_at--190--4031Chr02:29566626..29566650 (25 bp)
CGTCACAGTCCTCCGGCGTGACAGG
LOC_Os02g48320
OsAffx.24782.1.S1_at--114--4571Chr02:29566584..29566608 (25 bp)
GCGCCGGTGGCATGTCGCTCTACAA
LOC_Os02g48320
OsAffx.24782.1.S1_at--669--7711Chr02:29566579..29566603 (25 bp)
GGTGGCATGTCGCTCTACAACCTCG
LOC_Os02g48320
OsAffx.24782.1.S1_at--749--2631Chr02:29566561..29566585 (25 bp)
AACCTCGCCGGGAATGTGGGAGGCT
LOC_Os02g48320
OsAffx.24782.1.S1_at--280--8651Chr02:29566547..29566571 (25 bp)
TGTGGGAGGCTATCAGCTCCCCGGA
LOC_Os02g48320
OsAffx.24782.1.S1_at--318--6211Chr02:29566542..29566566 (25 bp)
GAGGCTATCAGCTCCCCGGAGACAA
LOC_Os02g48320
OsAffx.24782.1.S1_at--849--9451Chr02:29566535..29566559 (25 bp)
TCAGCTCCCCGGAGACAACTTCGGA
LOC_Os02g48320
Target Sequence 
AGCACAAGATCAAGTGGCACAATCAGCTGGACCCCCAGGGCAGCAACCGGCGGCGTCACAGTCCTCCGGCGTGACAGGAG
GCGACGGCACCGGCGGCGCCGGTGGCATGTCGCTCTACAACCTCGCCGGGAATGTGGGAGGCTATCAGCTCCCCGGAGAC
AACTTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis