Browse Element(s) Details


Os.164.1.S1_at

Description gb:AK069555.1
DB_XREF= gi:32979579
TID=Os.164.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019C15, full insert sequence.
FL= gb:AK069555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g483309/11Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48310NANA2+29556250..29559068hAT family dimerisation domain containing protein
LOC_Os02g48320OsAffx.24782.1.S1_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48320OsAffx.24782.1.S1_s_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0005792cellular_componentmicrosome
GO:0016020cellular_componentmembrane
GO:0042282molecular_functionhydroxymethylglutaryl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.164.1.S1_at--913--3011Chr02:29581620..29581644 (25 bp)
AATGCTAAACGTTTGGCTACCATAG
LOC_Os02g48330
Os.164.1.S1_at--473--1651Chr02:29581471..29581495 (25 bp)
AGCCCTTCGCATCATTCAAATGCTG
LOC_Os02g48330
Os.164.1.S1_at--374--5671Chr02:29581446..29581470 (25 bp)
GACATATTTAGACAGGGATTGCCCT
LOC_Os02g48330
Os.164.1.S1_at--438--5191Chr02:29581399..29581423 (25 bp)
GCAATGGGCTTGTACATACTGCTGA
LOC_Os02g48330
Os.164.1.S1_at--836--5871NONE
GAGCGATTCTTTAGTTCCCAACTCA
NONE
Os.164.1.S1_at--782--10471Chr02:29581309..29581333 (25 bp)
TTAACCTATAGTGCAGCTTCTGACT
LOC_Os02g48330
Os.164.1.S1_at--460--4911Chr02:29581294..29581318 (25 bp)
GCTTCTGACTGTAATTTTACCCTTC
LOC_Os02g48330
Os.164.1.S1_at--268--3411Chr02:29581150..29581174 (25 bp)
CAGCATAGAGAACCTGACTGTGTAT
LOC_Os02g48330
Os.164.1.S1_at--655--8751Chr02:29581126..29581150 (25 bp)
TGTTCATTTTACTGTTCGTTCTGCC
LOC_Os02g48330
Os.164.1.S1_at--805--9232Chr06:6970050..6970346 (25 bp)
TCCATGTCCCTCAGTTCTGAATTTT
NONE
Os.164.1.S1_at--614--10251Chr02:29581069..29581093 (25 bp)
TTTGTAGCCTGTATTGCATCTTGCC
NONE
Target Sequence 
AATGCTAAACGTTTGGCTACCATAGTAGCTGNCAGCGTGCTCGCTGGCGAGCTCTCGCTCCTTGCCGCTCTTGCCTCTGG
TCACCTTGTCAAGAGCCACATGATGTACAATCGATCAAGTAAGGATGTNGCCAAGGCTGCTTCTTGAGCAGCCCTTCGCA
TCATTCAAATGCTGGACATATTTAGACAGGGATTGCCCTGAGCTTGTGGAGAAGCGAATGAGCAATGGGCTTGTACATAC
TGCTGATAAGNGAGCGATTCTTTAGTTCCCAACTCAACCTGTATTATACTAGCATAATGTGTGAGGAGGCATTAACCTAT
AGTGCAGCTTCTGACTGTAATTTTACCCTTCAGTTTTTTTTTTCATTCTTCTGTAACCANTCAANCTTATTTTTCCATTT
TTTNCTGGATANCANCAGGNCAGNTTAACTTATGCTTTTGTNCAGTATANCNNCTCAGTAATTTTTGTTTACAGCATAGA
GAACCTGACTGTGTATGTTCATTTTACTGTTCGTTCTGCCTTTTGTTCCCTCCATGTCCCTCAGTTCTGAATTTTGTAGC
CTGTATTGCATCTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis