Browse Element(s) Details


Os.16957.1.S1_at

Description gb:AK101468.1
DB_XREF= gi:32986677
TID=Os.16957.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative TNP-like transposable element (OSJNBa0045B21.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040I24, full insert sequence.
FL= gb:AK101468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g483701/11ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005622cellular_componentintracellular
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16957.1.S1_at--959--2632Chr10:14064550..14064574 (25 bp)
AACCTTTTCAGTTCTTTCTGTCAGG
NONE
Os.16957.1.S1_at--641--5653Chr10:14064581..14064605 (25 bp)
GACAGATCGAGTTGCACTTACACAT
NONE
Os.16957.1.S1_at--659--8154Chr10:14064617..14064641 (25 bp)
GGAAATGCTCCAATGGCCCTTGAAT
NONE
Os.16957.1.S1_at--704--5133Chr10:14065876..14065895 (20 bp)
GCAAAATTGGTAGTTCCTCTCGTCC
NONE
Os.16957.1.S1_at--24--10553Chr10:14065941..14065965 (25 bp)
TTCATGTTCCCCTCAATATTTCTTT
NONE
Os.16957.1.S1_at--676--233Chr10:14065956..14065980 (25 bp)
ATATTTCTTTCTGGGTGCATGCACT
NONE
Os.16957.1.S1_at--51--4993Chr10:14065972..14065996 (25 bp)
GCATGCACTCTATGCTTGCTATGCA
NONE
Os.16957.1.S1_at--773--7353Chr10:14066010..14066034 (25 bp)
GTGAATGTGATCCTTATGCTGCAAA
NONE
Os.16957.1.S1_at--740--10853Chr10:14066087..14066111 (25 bp)
TTGGTGTCGGTGCATTGCCTCTGAA
NONE
Os.16957.1.S1_at--875--7533Chr10:14066149..14066173 (25 bp)
GTGGCATTGATATTCCCTTGGAGAT
NONE
Os.16957.1.S1_at--1067--7934Chr10:14066216..14066240 (25 bp)
GGATTTACCTAGCTAGCATGGCCTC
NONE
Target Sequence 
AACCTTTTCAGTTCTTTCTGTCAGGTTAATTGACAGATCGAGTTGCACTTACACATATCTTGTTTTAGGAAATGCTCCAA
TGGCCCTTGAATCCAGCAAAATTGGTAGTTCCTCTCGTCCTCCAGGCACCAGCTATAGACAATATCTATACCTCAAGGAA
GCCTCTTCATGTTCCCCTCAATATTTCTTTCTGGGTGCATGCACTCTATGCTTGCTATGCAAAACCCAATGTATGTGAAT
GTGATCCTTATGCTGCAAAGGTGCTACTATAAACACTTCGTTCTTTTATCTATNNATTTAAACATTCTTTGTTGGTGTCG
GTGCATTGCCTCTGAATTTTAGATCTTTTTTAGTGCAAAATGCATATGAATGTGTGGCATTGATATTCCCTTGGAGATGA
AACAAGGTATTCAGTGTTTGCAAATTAACATTTACGAGTAGGATTTACCTAGCTAGCATGGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis