Browse Element(s) Details


Os.53174.1.A1_s_at

Description gb:AK071194.1
DB_XREF= gi:32981217
TID=Os.53174.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087O16, full insert sequence.
FL= gb:AK071194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4835011/11Diacylglycerol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004144molecular_functiondiacylglycerol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53174.1.A1_s_at--1156--2731Chr02:29593942..29593966 (25 bp)
AAGAAAAATGCTCAGCCTACCTTTG
LOC_Os02g48350
Os.53174.1.A1_s_at--179--6631Chr02:29593689..29593713 (25 bp)
GTTGTCGCACTACAAGAACTGTTCG
LOC_Os02g48350
Os.53174.1.A1_s_at--397--7931Chr02:29593644..29593668 (25 bp)
GGATATCCCAACCTCCATTTAAGAG
LOC_Os02g48350
Os.53174.1.A1_s_at--822--6231Chr02:29593613..29593637 (25 bp)
GATGGCTTCTGTAAGTTCCAGCAGT
LOC_Os02g48350
Os.53174.1.A1_s_at--445--2971Chr02:29593558..29593582 (25 bp)
AATGGTTATGCTGTTAGGCCATCAA
LOC_Os02g48350
Os.53174.1.A1_s_at--38--6131Chr02:29593507..29593531 (25 bp)
GAGTGTGTTCAGTTCAAGAGCCAGA
LOC_Os02g48350
Os.53174.1.A1_s_at--388--3451Chr02:29593473..29593497 (25 bp)
CAGTAGCTTCAGACATGATTCGCCA
LOC_Os02g48350
Os.53174.1.A1_s_at--820--3391Chr02:29593439..29593463 (25 bp)
CAGCAGTTCAGTAAGGCAACGTATT
LOC_Os02g48350
Os.53174.1.A1_s_at--692--51Chr02:29593417..29593441 (25 bp)
ATTGACTGACGAATTATCCTCTGGT
LOC_Os02g48350
Os.53174.1.A1_s_at--745--551Chr02:29593402..29593426 (25 bp)
ATCCTCTGGTGGTTTGGCTTTGGCA
LOC_Os02g48350
Os.53174.1.A1_s_at--11--6831Chr02:29593338..29593362 (25 bp)
GTTTATTACTCACGATTCTCTCACA
LOC_Os02g48350
Target Sequence 
AAGAAAAATGCTCAGCCTACCTTTGATGAGATAAATGAAGTCCATGAACAATTNGTTGTCGCACTACAAGAACTGTTCGA
GAAGTACAAGACTAAAGCTGGATATCCCAACCTCCATTTAAGAGTTCTATGATGGCTTCTGTAAGTTCCAGCAGTAAGCT
CTAATGATCTGGATTTACGGAATAAAATGGTTATGCTGTTAGGCCATCAATTCAATCCCTCGTAGCACTGAAGCTGGAGT
GTGTTCAGTTCAAGAGCCAGAATCAGAATTCAGTAGCTTCAGACATGATTCGCCACATTCCCAACAGCAGTTCAGTAAGG
CAACGTATTGACTGACGAATTATCCTCTGGTGGTTTGGCTTTGGCAGAATAGAATGCATTGTATGTAANGTAAATGTGTA
CATTTGTTTATTACTCACGATTCTCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53174.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis