Browse Element(s) Details


Os.51819.1.S1_at

Description gb:AK066821.1
DB_XREF= gi:32976839
TID=Os.51819.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079H02, full insert sequence.
FL= gb:AK103759.1 gb:AK063867.1 gb:AK066821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4838011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51819.1.S1_at--92--631Chr02:29617986..29618010 (25 bp)
ATGCTGCATCCATTCTGCCGAAAAC
LOC_Os02g48380
Os.51819.1.S1_at--1045--10791Chr02:29618019..29618043 (25 bp)
TTGTTAGCCATAAGCTTGTGCCGCT
LOC_Os02g48380
Os.51819.1.S1_at--510--7391Chr02:29618087..29618111 (25 bp)
GTGAGGTATTCTGCTGCACTGACTC
LOC_Os02g48380
Os.51819.1.S1_at--648--3751Chr02:29618119..29618143 (25 bp)
CTCAGCCGCAACTGTCTTTGTATAT
LOC_Os02g48380
Os.51819.1.S1_at--203--10251Chr02:29618135..29618159 (25 bp)
TTTGTATATCCCAGCGAGCCGAAAT
LOC_Os02g48380
Os.51819.1.S1_at--974--2871Chr02:29618171..29618195 (25 bp)
AAGGGCTATTCGTCAACTGATCCGT
LOC_Os02g48380
Os.51819.1.S1_at--870--6371Chr02:29618189..29618213 (25 bp)
GATCCGTGCGTTAGCTAGACTTGTA
LOC_Os02g48380
Os.51819.1.S1_at--659--1271Chr02:29618221..29618245 (25 bp)
AGATACTCTGGCAGCTCTTAGCTTT
LOC_Os02g48380
Os.51819.1.S1_at--125--6631Chr02:29618378..29618402 (25 bp)
GTTGATTTCGTATACCTTTTTGGAT
LOC_Os02g48380
Os.51819.1.S1_at--993--8731Chr02:29618431..29618455 (25 bp)
TGTACCGTTGATTTTGGCTAAGGAT
LOC_Os02g48380
Os.51819.1.S1_at--450--3071Chr02:29618460..29618484 (25 bp)
AATCATACACACAAGACGGGCTGGT
LOC_Os02g48380
Target Sequence 
ATGCTGCATCCATTCTGCCGAAAACCGAGCATATTGTTAGCCATAAGCTTGTGCCGCTTGGTTCTGGTTCCCAGCAGCTG
CCAAGGATAACAATAACTTCAGTGAGGTATTCTGCTGCACTGACTCCTTCAGCCTCAGCCGCAACTGTCTTTGTATATCC
CAGCGAGCCGAAATTCAATTTGGAAAAGGGCTATTCGTCAACTGATCCGTGCGTTAGCTAGACTTGTATATACTCAGATA
CTCTGGCAGCTCTTAGCTTTGTTCCGGAGAAGCGAGGTATGCTCCTGAAAAAAACACGCCAGTTTTATCTTAATTCTTGA
ATAGGCCTGGAGCAGATTCTGTTGGTGAACAGCGGTTGGATCATTGCAAAAGTTTTGGCATTCTTTTCAGGTGTTGATTT
CGTATACCTTTTTGGATTGACCACATTTCTGTAACTTACGATTTTTGTACCGTTGATTTTGGCTAAGGATAATCAATCAT
ACACACAAGACGGGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis