Browse Element(s) Details


Os.8840.1.S1_at

Description gb:AK103643.1
DB_XREF= gi:32988852
TID=Os.8840.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033134O12, full insert sequence.
FL= gb:AK103643.1 gb:AK068469.1 gb:AK104867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4839011/11Ribose-phosphate pyrophosphokinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein
LOC_Os02g48390Os.8840.1.S1_at11/112+29619592..29621911Ribose-phosphate pyrophosphokinase 4, putative, expressed
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009165biological_processnucleotide biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0004749molecular_functionribose phosphate diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8840.1.S1_at--50--2711Chr02:29620690..29620714 (25 bp)
AAGCTATTGCTCAACTTCCCAATGG
LOC_Os02g48390
Os.8840.1.S1_at--245--10651Chr02:29620705..29620858 (25 bp)
TTCCCAATGGTTGTCTGCGCAAAGG
LOC_Os02g48390
Os.8840.1.S1_at--306--10071Chr02:29621441..29621465 (25 bp)
TAGTGCTTACGTGACTCATGCTGTT
LOC_Os02g48390
Os.8840.1.S1_at--192--8771Chr02:29621462..29621486 (25 bp)
TGTTTTTCCCAAGCAGTCGTATGAG
LOC_Os02g48390
Os.8840.1.S1_at--881--6911Chr02:29621480..29621504 (25 bp)
GTATGAGCGCTTCACTCACACTAAT
LOC_Os02g48390
Os.8840.1.S1_at--1018--3151Chr02:29621502..29621603 (25 bp)
AATTCCGCTGGGTCAGCTGACAAGT
LOC_Os02g48390
Os.8840.1.S1_at--664--6851Chr02:29621602..29621626 (25 bp)
GTTTGCGTATTTCTGGATCACTGAC
LOC_Os02g48390
Os.8840.1.S1_at--64--8951Chr02:29621623..29621647 (25 bp)
TGACTCCTGCCCTCAAACAGTGAAA
LOC_Os02g48390
Os.8840.1.S1_at--150--5871Chr02:29621680..29621704 (25 bp)
GAGCCTTGCTGGTTCGATTGCGGAT
LOC_Os02g48390
Os.8840.1.S1_at--92--3691Chr02:29621824..29621848 (25 bp)
CTTTGGCCTGACGTCTTCATAAACA
LOC_Os02g48390
Os.8840.1.S1_at--1056--471Chr02:29621887..29621911 (25 bp)
ATCTGTTCCTTCTTGAGCAAAGCGC
LOC_Os02g48390
Target Sequence 
AAGCTATTGCTCAACTTCCCAATGGTTGTCTGCGCAAAGGTTCGGGAAGGTGACAAGAGGATAGTTCGAATTAAGGAGGG
GAATCCTGAAGGCCGGCATGTGGTTATTGTTGATGATTTAGTGCAATCTGGGGGAACTCTTAGAGAATGTCAGAAAGTTT
TGGCTGCTCATGGTGCTGCAAAAGTTAGTGCTTACGTGACTCATGCTGTTTTTCCCAAGCAGTCGTATGAGCGCTTCACT
CACACTAATTCCGCTGGGTCAGCTGACAAGTTTGCGTATTTCTGGATCACTGACTCCTGCCCTCAAACAGTGAAAGCCAT
CAACCAACAACCTCCATTTGAGGTGTTGAGCCTTGCTGGTTCGATTGCGGATGCCCTTCAAATATGAACTTTGTTTTTGG
TAATGGGCTACTCCCATTTTTCCTAAATGTNAGAGTTCACTTTNAGCTCCAGTAAAAACAAATAATGTGGAGTGAGTTAT
CTTAATTATGGCTTTGGCCTGACGTCTTCATAAACATCTCAATATGTGATGGTAAAATAAGGCATTTGATGCTCATCTGT
TCCTTCTTGAGCAAAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis