Browse Element(s) Details


Os.15114.1.S1_at

Description gb:AK067428.1
DB_XREF= gi:32977446
TID=Os.15114.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107D05, full insert sequence.
FL= gb:AK067428.1 gb:AK073538.1 gb:AK104943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4834011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48320OsAffx.24782.1.S1_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48320OsAffx.24782.1.S1_s_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48330Os.164.1.S1_at9/112+29581069..29586122Hydroxymethylglutaryl-coenzyme A reductase family protein, expressed
LOC_Os02g48340Os.15114.1.S1_at11/112+29588754..29593032RNA recognition motif family protein, expressed
LOC_Os02g48350Os.53174.1.A1_s_at11/112+29593278..29595956Diacylglycerol acyltransferase family protein, expressed
LOC_Os02g48360Os.12866.1.S1_at11/112+29598590..29604280Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os02g48370Os.54897.1.S1_at11/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48370Os.16957.1.S1_at1/112+29605288..29610382ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os02g48380Os.51819.1.S1_at11/112+29612661..29618583expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15114.1.S1_at--1036--6891Chr02:29592634..29592658 (25 bp)
GTATCAGAACTACCGTCTATTGTGT
LOC_Os02g48340
Os.15114.1.S1_at--515--5471Chr02:29592640..29592664 (25 bp)
GAACTACCGTCTATTGTGTTACTGG
LOC_Os02g48340
Os.15114.1.S1_at--829--1771Chr02:29592645..29592669 (25 bp)
ACCGTCTATTGTGTTACTGGTATCG
LOC_Os02g48340
Os.15114.1.S1_at--929--3171Chr02:29592901..29592925 (25 bp)
AATTGGGTGTTTTCTGTGTGACGAC
LOC_Os02g48340
Os.15114.1.S1_at--964--10591Chr02:29592912..29592936 (25 bp)
TTCTGTGTGACGACAATGCTCTCTG
LOC_Os02g48340
Os.15114.1.S1_at--262--3011Chr02:29592926..29592950 (25 bp)
AATGCTCTCTGCTCGAGTTAGCGGT
LOC_Os02g48340
Os.15114.1.S1_at--219--3791Chr02:29592937..29592961 (25 bp)
CTCGAGTTAGCGGTATCAGTCTTGA
LOC_Os02g48340
Os.15114.1.S1_at--4--4691Chr02:29592946..29592970 (25 bp)
GCGGTATCAGTCTTGATCGTTAAAA
LOC_Os02g48340
Os.15114.1.S1_at--1079--7011Chr02:29592974..29592998 (25 bp)
GTACAAATTGTTCTGCGGTTTGGCA
LOC_Os02g48340
Os.15114.1.S1_at--1150--9131Chr02:29592987..29593011 (25 bp)
TGCGGTTTGGCAGTCTTGTGTATTA
LOC_Os02g48340
Os.15114.1.S1_at--665--10851Chr02:29592993..29593017 (25 bp)
TTGGCAGTCTTGTGTATTATGTGAA
LOC_Os02g48340
Target Sequence 
GTATCAGAACTACCGTCTATTGTGTTACTGGTATCGGTATCAGAACTGTTGTTATGTGTTTAATTTTTCATTGCTATGTG
CTCAGCAGTTCCTCGACTTCCGAGAACGGCACTTTGTTGTCCGACCAAAATAAATCAGTTCGGATGAGAAACCCATGCTT
TGGGGTCTTATCGGTGTTGTGTAAGCCTGGATTGTTAAAACTTGTACTATTTGTACAAATTGTTTTGCTGTTTTGCAGTG
ATGTGTATTATGTGAAATTGTTTCAGAAATTGGGTGTTTTCTGTGTGACGACAATGCTCTCTGCTCGAGTTAGCGGTATC
AGTCTTGATCGTTAAAACTTGTACAAATTGTTCTGCGGTTTGGCAGTCTTGTGTATTATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis