Browse Element(s) Details


Os.17412.1.S1_at

Description gb:AK100401.1
DB_XREF= gi:32985610
TID=Os.17412.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086N19, full insert sequence.
FL= gb:AK100401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0989011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09870NANA2+5094976..5098828retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g09880OsAffx.2560.1.S1_at11/112+5112712..5112942hypothetical protein
LOC_Os02g09890Os.17412.1.S1_at11/112+5118281..5121509expressed protein
LOC_Os02g09900Os.26759.1.S1_at11/112+5121678..5125732transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g09910OsAffx.11965.1.S1_at11/112+5131555..5132334PHD-finger family protein
LOC_Os02g09920Os.47884.1.S1_at11/112+5145559..5151128PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17412.1.S1_at--160--7751Chr02:5118852..5118876 (25 bp)
GGTGTCACCCTATGGGTCAGGTGCA
LOC_Os02g09890
Os.17412.1.S1_at--186--1051Chr02:5118834..5118858 (25 bp)
AGGTGCACAGCCTCCGCAGTATGGA
LOC_Os02g09890
Os.17412.1.S1_at--896--9731Chr02:5118792..5118816 (25 bp)
TAATCCTGGCAGTGCTTACCAAGCA
LOC_Os02g09890
Os.17412.1.S1_at--115--2231Chr02:5118705..5118729 (25 bp)
ACAATGCGCTGCTTTGTACACCAGA
LOC_Os02g09890
Os.17412.1.S1_at--43--7031Chr02:5118690..5118714 (25 bp)
GTACACCAGAGTTCAGTTTCCTTTC
LOC_Os02g09890
Os.17412.1.S1_at--636--10291Chr02:5118669..5118693 (25 bp)
TTTCCACAGCTACCAAATCTTGTCG
LOC_Os02g09890
Os.17412.1.S1_at--428--10351Chr02:5118537..5118561 (25 bp)
TTTTTTATACCTTCAAGCCTCCAGG
LOC_Os02g09890
Os.17412.1.S1_at--346--371Chr02:5118364..5118388 (25 bp)
ATAATATGCCCGTGCTGGAGATTCT
LOC_Os02g09890
Os.17412.1.S1_at--29--651Chr02:5118324..5118348 (25 bp)
ATGCATTCGTTCTGTTTATCCTGTA
LOC_Os02g09890
Os.17412.1.S1_at--117--7051Chr02:5118302..5118326 (25 bp)
GTAAATGCGCATGCCCAGGATGCAT
LOC_Os02g09890
Os.17412.1.S1_at--720--9051Chr02:5118282..5118306 (25 bp)
TGCATACATCCGACATTCCCAATGA
LOC_Os02g09890
Target Sequence 
GGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACC
AAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCT
TTGTACACCAGAGTTCAGTTTCCTTTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAG
TCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTT
TATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGA
TTTGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACNCTGCTAGTTCTG
GGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGTTTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGC
ATGCCCAGGATGCATACATCCGACATTCCCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis