Browse Element(s) Details


Os.47884.1.S1_at

Description gb:AK072184.1
DB_XREF= gi:32982207
TID=Os.47884.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136H24, full insert sequence.
FL= gb:AK110819.1 gb:AK072184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0992011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09890Os.17412.1.S1_at11/112+5118281..5121509expressed protein
LOC_Os02g09900Os.26759.1.S1_at11/112+5121678..5125732transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g09910OsAffx.11965.1.S1_at11/112+5131555..5132334PHD-finger family protein
LOC_Os02g09920Os.47884.1.S1_at11/112+5145559..5151128PHD-finger family protein, expressed
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47884.1.S1_at--179--9991Chr02:5150551..5150575 (25 bp)
TAGCGTGGTAGACATCGTTCCGGTA
LOC_Os02g09920
Os.47884.1.S1_at--948--1291Chr02:5150584..5150608 (25 bp)
AGAGTTCAACCCTGACTGTGTTTTC
LOC_Os02g09920
Os.47884.1.S1_at--637--10371Chr02:5150604..5150628 (25 bp)
TTTTCTTTTACCTCGTATCTACCAG
LOC_Os02g09920
Os.47884.1.S1_at--1144--7831Chr02:5150680..5150704 (25 bp)
GGTACTCCATGTGCGAGCATTCGAT
LOC_Os02g09920
Os.47884.1.S1_at--642--3591Chr02:5150697..5150721 (25 bp)
CATTCGATCTTGATGCCACCATGTA
LOC_Os02g09920
Os.47884.1.S1_at--189--7311Chr02:5150743..5150767 (25 bp)
GTGCTGGCATTTTGATCTGATCCGC
LOC_Os02g09920
Os.47884.1.S1_at--246--1191Chr02:5150772..5150796 (25 bp)
AGTACCCGGTGCAATTTTCTCTGTT
LOC_Os02g09920
Os.47884.1.S1_at--1098--10571Chr02:5150788..5150812 (25 bp)
TTCTCTGTTGGACTAACCCTATTCA
LOC_Os02g09920
Os.47884.1.S1_at--991--991Chr02:5150860..5150884 (25 bp)
AGGATATGTCTCATTTTCTACCCAC
LOC_Os02g09920
Os.47884.1.S1_at--323--6971Chr02:5150913..5150937 (25 bp)
GTAGCGGGTGTTAGTTTCTCATTCT
LOC_Os02g09920
Os.47884.1.S1_at--482--1211Chr02:5150925..5150949 (25 bp)
AGTTTCTCATTCTCATGGTCTGTAC
LOC_Os02g09920
Target Sequence 
TAGCGTGGTAGACATCGTTCCGGTACCCCTGCAAGAGTTCAACCCTGACTGTGTTTTCTTTTACCTCGTATCTACCAGCC
TACCGTTTTTCGACNTNTGTTGTGGTTTTAGGTTCCAGAAGGAAGAATTGGTACTCCATGTGCGAGCATTCGATCTTGAT
GCCACCATGTAAATTGTTTGAGGCACCTGCAAGTGCTGGCATTTTGATCTGATCCGCCAGGAGTACCCGGTGCAATTTTC
TCTGTTGGACTAACCCTATTCATTGTAGAGGTTATTCCATAGGAGATAGAGGAGACATGTCAGGTAGGGAGGATATGTCT
CATTTTCTACCCACTTTCACTCTATTAGCCGCAGTGGGTAGTGTAGCGGGTGTTAGTTTCTCATTCTCATGGTCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis