Browse Element(s) Details


Os.4251.1.S1_at

Description gb:AK061629.1
DB_XREF= gi:32971647
TID=Os.4251.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H06, full insert sequence.
FL= gb:AK061629.1 gb:AK065909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0994011/11AhpC/TSA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09920Os.47884.1.S1_at11/112+5145559..5151128PHD-finger family protein, expressed
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4251.1.S1_at--483--2951Chr02:5167247..5167271 (25 bp)
AAGGCGCTCTGAAGATGGAATCCGA
LOC_Os02g09940
Os.4251.1.S1_at--284--5251Chr02:5167230..5167254 (25 bp)
GAATCCGAGCTCTCGTAGGTGGCAA
LOC_Os02g09940
Os.4251.1.S1_at--1028--5891Chr02:5167224..5167248 (25 bp)
GAGCTCTCGTAGGTGGCAACAATGG
LOC_Os02g09940
Os.4251.1.S1_at--180--2231Chr02:5167206..5167230 (25 bp)
ACAATGGCAGGATCAGCCCGTTGCT
LOC_Os02g09940
Os.4251.1.S1_at--604--10711Chr02:5167186..5167210 (25 bp)
TTGCTCTCGCGCGTTGGTGAGTAGC
LOC_Os02g09940
Os.4251.1.S1_at--129--10391Chr02:5167125..5167149 (25 bp)
TTTTCGGTTGAATGTTGCATGCCAT
LOC_Os02g09940
Os.4251.1.S1_at--54--6671Chr02:5167112..5167136 (25 bp)
GTTGCATGCCATGTGCTTGACGAAA
LOC_Os02g09940
Os.4251.1.S1_at--456--4431Chr02:5167105..5167129 (25 bp)
GCCATGTGCTTGACGAAATGACGGA
LOC_Os02g09940
Os.4251.1.S1_at--1146--2351Chr02:5167034..5167058 (25 bp)
AAACCATGTGTTTGACGAAATGTCG
LOC_Os02g09940
Os.4251.1.S1_at--468--8711Chr02:5167014..5167038 (25 bp)
TGTCGAGATATGAAAGCTGTGAAAT
LOC_Os02g09940
Os.4251.1.S1_at--1140--7331Chr02:5166996..5167020 (25 bp)
GTGAAATCGCTTACGTCACGTGCAC
LOC_Os02g09940
Target Sequence 
AAGGCGCTCTGAAGATGGAATCCGAGCTCTCGTAGGTGGCAACAATGGCAGGATCAGCCCGTTGCTCTCGCGCGTTGGTG
AGTAGCGTCGTCGTTGTGANGAGGAAATTTTGTGTGTGTTTTTTTTCGGTTGAATGTTGCATGCCATGTGCTTGACGAAA
TGACGGAATAACAAAAGAAAAAAAACTACTTTTNTTTTTTTGTTGAAATTTNCAAACCATGTGTTTGACGAAATGTCGAG
ATATGAAAGCTGTGAAATCGCTTACGTCACGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis