Browse Element(s) Details


Os.55985.1.S1_at

Description gb:AK109089.1
DB_XREF= gi:32994298
TID=Os.55985.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A01, full insert sequence.
FL= gb:AK109089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g099709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55985.1.S1_at--205--8711Chr02:5183968..5183992 (25 bp)
TGTCCAGCGCCGACATGGGCAGGCT
LOC_Os02g09970
Os.55985.1.S1_at--968--2731Chr02:5183858..5183882 (25 bp)
AAGAAGGTGCACGTCATGCCGGCGC
LOC_Os02g09970
Os.55985.1.S1_at--1162--1031Chr02:5183854..5183878 (25 bp)
AGGTGCACGTCATGCCGGCGCAAGC
LOC_Os02g09970
Os.55985.1.S1_at--559--4591Chr02:5183837..5183861 (25 bp)
GCGCAAGCGCAAAGCAGAGACGACG
LOC_Os02g09970
Os.55985.1.S1_at--477--8791NONE
TGTTCGCCGCGTTCCTGAGTCCGGC
NONE
Os.55985.1.S1_at--866--9491Chr02:5183693..5183717 (25 bp)
TCTCCGCTGAAGAGGGCGTTGAGCT
LOC_Os02g09970
Os.55985.1.S1_at--133--11Chr02:5183623..5183647 (25 bp)
AGGAATCCGTTTCTTGTTTTGCGCA
LOC_Os02g09970
Os.55985.1.S1_at--682--551Chr02:5183619..5183643 (25 bp)
ATCCGTTTCTTGTTTTGCGCAAAGT
LOC_Os02g09970
Os.55985.1.S1_at--791--10271Chr02:5183606..5183630 (25 bp)
TTTGCGCAAAGTAGAATGAACCAGT
LOC_Os02g09970
Os.55985.1.S1_at--1105--651Chr02:5183591..5183615 (25 bp)
ATGAACCAGTATATCATCCTCAAGT
LOC_Os02g09970
Os.55985.1.S1_at--2--571Chr02:5183576..5183600 (25 bp)
ATCCTCAAGTTTGGTTGTACTCACA
NONE
Target Sequence 
TGTCCAGCGCCGACATGGGCAGGCTCGCCGTCCGCGCGAGCCTGGCGCTCGTCGGCGAGAGGCCACAGCGGCGGCGGCGA
CACCGGCAAGGCGGCGGCAAGAAGCAGAAGAAGAAGGTGCACGTCATGCCGGCGCAAGCGCAAAGCAGAGACGACGGCGA
CGGCGACGTCGACGGCGTGTTCAACGAGAAGCTGAACGAGCAGACGCTCGGCGTGTTCGCCGCGTTCCTGAGTCCGGCGA
GAGGCGCCGCGCCGGCGGCGGCGGCGGCGGCGAGGTCTCCGCTGAAGAGGGCGTTGAGCTTAGTAGAAGAGGAGGCATAG
TAGTGAGGCAGTAGGAAGTAGTAGTAGGAATCCGTTTCTTGTTTTGCGCAAAGTAGAATGAACCAGTATATCATCCTCAA
GTTTGGTTGTACTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis