Browse Element(s) Details


Os.55519.1.S1_at

Description gb:AK108239.1
DB_XREF= gi:32993448
TID=Os.55519.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G11, full insert sequence.
FL= gb:AK108239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g099906/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55519.1.S1_at--859--571Chr02:5194642..5194666 (25 bp)
ATCCAAGAGGATGCATAAATATTCA
LOC_Os02g09990
Os.55519.1.S1_at--22--10371Chr02:5194583..5194607 (25 bp)
TTTTCAGAAGCTCGAAGCCCAATAC
LOC_Os02g09990
Os.55519.1.S1_at--509--3411Chr02:5194579..5194603 (25 bp)
CAGAAGCTCGAAGCCCAATACATGC
LOC_Os02g09990
Os.55519.1.S1_at--470--2691Chr02:5194576..5194600 (25 bp)
AAGCTCGAAGCCCAATACATGCTTA
LOC_Os02g09990
Os.55519.1.S1_at--84--4811Chr02:5194574..5194598 (25 bp)
GCTCGAAGCCCAATACATGCTTAAA
LOC_Os02g09990
Os.55519.1.S1_at--441--5411Chr02:5194570..5194594 (25 bp)
GAAGCCCAATACATGCTTAAAGCTT
LOC_Os02g09990
Os.55519.1.S1_at--649--9511Chr06:2773033..2773057 (25 bp)
TCTCGGGTTCTTCTTATATCGCAAG
NONE
Os.55519.1.S1_at--396--3791Chr06:2773032..2773056 (25 bp)
CTCGGGTTCTTCTTATATCGCAAGA
NONE
Os.55519.1.S1_at--723--9431Chr06:2773031..2773055 (25 bp)
TCGGGTTCTTCTTATATCGCAAGAA
NONE
Os.55519.1.S1_at--970--3971Chr06:2773030..2773054 (25 bp)
CGGGTTCTTCTTATATCGCAAGAAA
NONE
Os.55519.1.S1_at--932--7871Chr06:2773028..2773052 (25 bp)
GGTTCTTCTTATATCGCAAGAAAGG
NONE
Target Sequence 
ATCCAAGAGGATGCATAAATATTCAATTTTTTCCACTTCTTTTTTGGGGAAACAATTTTTTTTCAGAAGCTCGAAGCCCA
ATACATGCTTAAAGCTTTAATTAATACTTGCTCTGTTTCAGAATGTTTCAAAAAAAATTGTCTCGGGTTCTTCTTATATC
GCAAGAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis