Browse Element(s) Details


OsAffx.24181.1.S1_at

Description tigr:9630.m00919
TID=OsAffx.24181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1003010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24181.1.S1_at--1121--10371Chr02:5216929..5216953 (25 bp)
TTTTCAGATTCAATTTCCAGAAGGA
LOC_Os02g10030
OsAffx.24181.1.S1_at--1072--10271Chr02:5216942..5216966 (25 bp)
TTTCCAGAAGGATAGTGATGCAACA
LOC_Os02g10030
OsAffx.24181.1.S1_at--1140--6111Chr02:5216982..5217006 (25 bp)
GAGTGATCAGACAAAGTCTCAACCT
LOC_Os02g10030
OsAffx.24181.1.S1_at--904--2311Chr02:5216994..5217018 (25 bp)
AAAGTCTCAACCTCACAAAACAAAG
LOC_Os02g10030
OsAffx.24181.1.S1_at--905--5191Chr02:5217034..5217058 (25 bp)
GAATTCCCAACTCACAAGTACAAGG
LOC_Os02g10030
OsAffx.24181.1.S1_at--983--7031NONE
GTACAAGGTGATCAGCATCAGCTGC
NONE
OsAffx.24181.1.S1_at--807--5891Chr02:5217839..5217863 (25 bp)
GAGCTCAATTGCTGCCCGAGGAGGT
LOC_Os02g10030
OsAffx.24181.1.S1_at--595--4611Chr02:5217890..5217914 (25 bp)
GCGACCACCGTGATGAGGGCACAGC
LOC_Os02g10030
OsAffx.24181.1.S1_at--1110--4611Chr02:5217969..5217993 (25 bp)
GCGAGAGCTCTTTCCAGGCGGAGGC
LOC_Os02g10030
OsAffx.24181.1.S1_at--491--911Chr02:5217984..5218008 (25 bp)
AGGCGGAGGCCATTGCCGACTGCTT
LOC_Os02g10030
OsAffx.24181.1.S1_at--113--10711Chr02:5217996..5218020 (25 bp)
TTGCCGACTGCTTGGAGTTCATCAA
LOC_Os02g10030
Target Sequence 
TTTTCAGATTCAATTTCCAGAAGGATAGTGATGCAACAGAGGTGTGAGGCTGAGAGTGATCAGACAAAGTCTCAACCTCA
CAAAACAAAGGCACAAAAATATTCAGAATTCCCAACTCACAAGTACAAGGTGATCAGCATCAGCTGCCGGCCGGCGACCG
GCCGCCGGGGACGGCGGGTGCGGCATGTCCGGCTGGGCTCGGTGCTCCGGCTGCGGGTGAGGCTGTTCGGCGTCGTCGGG
CTGCTGCTCCGGTGCCTGGAGGAGCTCAATTGCTGCCCGAGGAGGTGGTCGCCGGCGACGGCGGCGGCGGCGGCGACCAC
CGTGATGAGGGCACAGCGGCTGAGCCAGGACTGCCGGCGCCGGCGGCTGGCGGCGCCGGCGGAGGCCGGCGGCGAGAGCT
CTTTCCAGGCGGAGGCCATTGCCGACTGCTTGGAGTTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis