Browse Element(s) Details


Os.4264.1.S1_at

Description gb:AF302906.1
DB_XREF= gi:11066953
TID=Os.4264.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4264 (NCBI UniGene Cluster)
DEF=Oryza sativa citrate synthase mRNA, complete cds.
PROD=citrate synthase
FL= gb:AF302906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1007010/11Citrate synthase 4, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0006635biological_processfatty acid beta-oxidation
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0003878molecular_functionATP citrate synthase activity
GO:0004108molecular_functioncitrate (Si)-synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4264.1.S1_at--28--9871Chr02:5243303..5243327 (25 bp)
TACACTGTTCTTTTCGGAGTTTCAA
LOC_Os02g10070
Os.4264.1.S1_at--1004--4931Chr02:5243155..5243299 (25 bp)
GCATTGGAATAGGATCTCAGCTCAT
LOC_Os02g10070
Os.4264.1.S1_at--744--9851Chr02:5243036..5243060 (25 bp)
TACACACGCCTACACGGCTGCGTTT
LOC_Os02g10070
Os.4264.1.S1_at--696--4971Chr02:5242986..5243010 (25 bp)
GCATCTTTGATGCTAATAACTGAGC
LOC_Os02g10070
Os.4264.1.S1_at--71--1991Chr02:5242957..5242981 (25 bp)
ACTCGAAAGAGTTAGCCGCATTTTA
LOC_Os02g10070
Os.4264.1.S1_at--530--631Chr02:5242897..5242921 (25 bp)
ATGCTCTCAGCTGGTAGGATTTTGT
LOC_Os02g10070
Os.4264.1.S1_at--652--6931Chr02:5242884..5242908 (25 bp)
GTAGGATTTTGTAACCGTCGTCAGT
LOC_Os02g10070
Os.4264.1.S1_at--164--2631Chr02:5242872..5242896 (25 bp)
AACCGTCGTCAGTTGGTATGCTCAA
LOC_Os02g10070
Os.4264.1.S1_at--1103--7851Chr02:5242858..5242882 (25 bp)
GGTATGCTCAAAGTTTATCTGCCAT
LOC_Os02g10070
Os.4264.1.S1_at--1161--3731Chr02:5242852..5242876 (25 bp)
CTCAAAGTTTATCTGCCATTGGGCA
LOC_Os02g10070
Os.4264.1.S1_at--691--151Chr02:5242739..5242763 (25 bp)
ATATACCAATTGCTGGTTACGGTAC
NONE
Target Sequence 
TACACTGTTCTTTTCGGAGTTTCAAGGAGCATTGGAATAGGATCTCAGCTCATTTGGGACCGTGCTCTTGGCCTGCCGCT
CGAAAGACCGAAGAGTGTCACCATGGAGTGGCTGGAGAACCACTGCAAGAAGGTTGCTGCTTGAAGCTACACACGCCTAC
ACGGCTGCGTTTTTTTTTTTTTTTNNNNACTCTTTGAGCATCTTTGATGCTAATAACTGAGCATAAACTCGAAAGAGTTA
GCCGCATTTTACCCTTTTTTCCCCCGGGCCAATAAACAAGAGGAAGATGCTCTCAGCTGGTAGGATTTTGTAACCGTCGT
CAGTTGGTATGCTCAAAGTTTATCTGCCATTGGGCAACAATGTGATTAGTTTTANTTTGCTTAGAGCTTTTTTTTTTGTT
CGTTGCTGAACAACTTTTTCGAGCATTTTAAGTTTGCTCGAGTTAATATACCAATTGCTGGTTACGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis