Browse Element(s) Details


Os.56430.1.S1_x_at

Description gb:AK110011.1
DB_XREF= gi:32995220
TID=Os.56430.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-159-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-159-G09, full insert sequence.
FL= gb:AK110011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g101009/11Leucine Rich Repeat family protein, expressed
LOC_Os01g688701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56430.1.S1_x_at--979--7411Chr02:5260131..5260155 (25 bp)
GTGTTCGACGCTTGCCTGCCGGTGT
LOC_Os02g10100
Os.56430.1.S1_x_at--1078--1972Chr01:40350308..40350328 (21 bp)
ACTGCACCGCCGACGAGCCGTGGAG
LOC_Os01g68870
Os.56430.1.S1_x_at--181--4271Chr02:5259939..5259963 (25 bp)
CCGGCGATGCCATGATCTTGCTGCT
LOC_Os02g10100
Os.56430.1.S1_x_at--446--6431Chr02:5259926..5259950 (25 bp)
GATCTTGCTGCTGCTATACTGTATA
LOC_Os02g10100
Os.56430.1.S1_x_at--953--4871Chr02:5259914..5259938 (25 bp)
GCTATACTGTATACTGTAGTGCATC
LOC_Os02g10100
Os.56430.1.S1_x_at--120--1971NONE
ACTGTAGTGCATCATACTCCTTTTT
NONE
Os.56430.1.S1_x_at--750--9591NONE
TCATACTCCTTTTTGTGAATTAAGG
NONE
Os.56430.1.S1_x_at--616--7751Chr02:5259868..5259892 (25 bp)
GGTGTTTTGATCTCATCTTATATGC
LOC_Os02g10100
Os.56430.1.S1_x_at--1000--6411Chr02:5259860..5259884 (25 bp)
GATCTCATCTTATATGCGGACACAG
LOC_Os02g10100
Os.56430.1.S1_x_at--853--251Chr02:5259849..5259873 (25 bp)
ATATGCGGACACAGAGATGCAGCAG
LOC_Os02g10100
Os.56430.1.S1_x_at--482--6331Chr02:5259834..5259858 (25 bp)
GATGCAGCAGAAACTCAATTTTTTA
LOC_Os02g10100
Target Sequence 
GTGTTCGACGCTTGCCTGCCGGTGTCCGGCGCGGAGCGGGAGCAGATGGCGCGGGTGCTCGACGTCGCCCGCGACTGCAC
CGCCGACGAGCCGTGGAGGAGGCCGACCATGGCGGAGGTGGCCAGGAGGGTGGGGGCGATCGAGGCGATGGAGTACGGGC
CTCTGGTGGTGGCAGTGTCCAGTGGCGAGCCGCCGGCGATGCCATGATCTTGCTGCTGCTATACTGTATACTGTAGTGCA
TCATACTCCTTTTTGTGAATTAAGGTGTTTTGATCTCATCTTATATGCGGACACAGAGATGCAGCAGAAACTCAATTTTT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56430.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis