Browse Element(s) Details


OsAffx.12695.1.S1_at

Description tigr:9630.m05880
TID=OsAffx.12695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1011011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12695.1.S1_at--693--231Chr02:5274389..5274413 (25 bp)
ATATTTTGCTCGATGCTCAGCTCAT
LOC_Os02g10110
OsAffx.12695.1.S1_at--181--9791Chr02:5274446..5274470 (25 bp)
TAAGCCAATTTGTCAGTGCCATAAG
LOC_Os02g10110
OsAffx.12695.1.S1_at--1010--5451Chr02:5275173..5275193 (21 bp)
GAACGGACTCAGAAGCTCTCAACAG
LOC_Os02g10110
OsAffx.12695.1.S1_at--38--10131Chr02:5275204..5275228 (25 bp)
TATGTTGCACCTGAGCTTACTGACC
LOC_Os02g10110
OsAffx.12695.1.S1_at--1012--10711Chr02:5275276..5275300 (25 bp)
TTGCTCGTGCTTTTGACTGGGCAGA
LOC_Os02g10110
OsAffx.12695.1.S1_at--830--7591Chr02:5275294..5275385 (25 bp)
GGGCAGAAGGCCTTTGACAGTTCAA
LOC_Os02g10110
OsAffx.12695.1.S1_at--911--10571Chr02:5275404..5275428 (25 bp)
TTCTAGTTGATTGGGCATCTCCTCA
LOC_Os02g10110
OsAffx.12695.1.S1_at--490--3271Chr02:5275513..5275537 (25 bp)
CAACATCATCTTACTCTGCATCAAG
LOC_Os02g10110
OsAffx.12695.1.S1_at--884--5391Chr02:5275847..5275871 (25 bp)
GAAGCTTGTCCAGTCGACAGGTCTT
LOC_Os02g10110
OsAffx.12695.1.S1_at--420--8851Chr02:5275907..5275931 (25 bp)
TGATGCTCAGGAACCCTCTTTCAAA
LOC_Os02g10110
OsAffx.12695.1.S1_at--1020--191Chr02:5275945..5275965 (21 bp)
ATTTCGAGCCATCCTTTACAGTAAG
LOC_Os02g10110
Target Sequence 
ATATTTTGCTCGATGCTCAGCTCATGCCCTACCTCAGCCACTGTGGATTAGCCAGGCTAAGCCAATTTGTCAGTGCCATA
AGAACGGACTCAGAAGCTCTCAACAGTGGTAAAGGCTATGTTGCACCTGAGCTTACTGACCCAGCAACAGATAGCATCAA
GGCTGACATTTACAGTTTCGGTGTGATTTTGCTCGTGCTTTTGACTGGGCAGAAGGCCTTTGACAGTTCAAGAAGGCAGA
ATGAGCAGTTTCTAGTTGATTGGGCATCTCCTCATCTCCATAACCTTGATTCTTTGGAAAGAATAACTGATCCAAGAATA
CATGCATCTATGCCACCTCAAGCTATCTCTACGTTAGGCAACATCATCTTACTCTGCATCAAGAAATCACCAGAGCTCCG
TCCGCCAATGACAGTCATAACAGACAAACTACTGAAGCTTGTCCAGTCGACAGGTCTTCAAAAGACCAGCACGACGACAC
AACACTTGGAGGTTGATGCTCAGGAACCCTCTTTCAAAACAACCAGACCGTATTTCGAGCCATCCTTTACAGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis