Browse Element(s) Details


Os.15829.1.S1_at

Description gb:AK071915.1
DB_XREF= gi:32981938
TID=Os.15829.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence.
FL= gb:AK071915.1 gb:AK061610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1012010/11Lipoxygenase 2.3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15829.1.S1_at--1064--5771Chr02:5277067..5277091 (25 bp)
GACGAGCGGAACAACGACCCGGAGC
LOC_Os02g10120
Os.15829.1.S1_at--1095--8891Chr02:5276941..5276965 (25 bp)
TGAGTTTCGCTAGCTAAGATAGCTA
LOC_Os02g10120
Os.15829.1.S1_at--976--1252Chr11:15362526..15362679 (25 bp)
AGATAGCTAGCTGCATTTGGGACAA
NONE
Os.15829.1.S1_at--165--6031Chr02:5276895..5276919 (25 bp)
GAGATGGTTAAGATTTGTACACTAA
LOC_Os02g10120
Os.15829.1.S1_at--796--9851Chr02:5276878..5276902 (25 bp)
TACACTAAGATCATGTACCAACACT
LOC_Os02g10120
Os.15829.1.S1_at--136--731Chr02:5276866..5276890 (25 bp)
ATGTACCAACACTAATAGCTCCCGT
LOC_Os02g10120
Os.15829.1.S1_at--696--9751Chr02:5276854..5276878 (25 bp)
TAATAGCTCCCGTGTATGCCTGCCT
LOC_Os02g10120
Os.15829.1.S1_at--192--4291Chr02:5276832..5276856 (25 bp)
CCTGCCACGGGAGAGGCATTTGCTA
LOC_Os02g10120
Os.15829.1.S1_at--1080--1091Chr02:5276808..5276832 (25 bp)
AGTGTGTTTGAGTTACTAGAATGCC
LOC_Os02g10120
Os.15829.1.S1_at--1107--10731Chr02:5276763..5276787 (25 bp)
TTGAACTAAAGCTCAGTTCGCTGAG
LOC_Os02g10120
Os.15829.1.S1_at--155--2131NONE
ACAGGCAAAGGGTGCATGTGTCTGA
NONE
Target Sequence 
GACGAGCGGAACAACGACCCGGAGCTCAGGAACAGGTGCGGCGCCGGCATCGTGCCGTACGAGCTGCTCAAGCCGTTNTC
CACGCCCGGGGTCACCGGGAGGGGCATCCCAAACAGCATNTCCATNTGAGTTTCGCTAGCTAAGATAGCTAGCTGCATTT
GGGACAAGATTGGAGATGGTTAAGATTTGTACACTAAGATCATGTACCAACACTAATAGCTCCCGTGTATGCCTGCCTGC
CACGGGAGAGGCATTTGCTAGTGTGTTTGAGTTACTAGAATGCCNCAAATTAGTAAAGAGGTTATTGAACTAAAGCTCAG
TTCGCTGAGTTTTNTAGAAATTGGCAGTATGTCATGCGGACGGATGGGATNTGCTGGATTCAGCNCATATCATCCAAGAA
AAATTNCTCACAGCAGAACAGGCAAAGGGTGCATGTGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis