Browse Element(s) Details


Os.4266.1.S1_at

Description gb:AK072385.1
DB_XREF= gi:32982408
TID=Os.4266.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080M13, full insert sequence.
FL= gb:AK072385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1009011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4266.1.S1_at--1050--4851Chr02:5254581..5254605 (25 bp)
GCTATGCGCGCAAAGAACACCTATC
LOC_Os02g10090
Os.4266.1.S1_at--384--10111Chr02:5254560..5254584 (25 bp)
TATCAGGAAGCTCACCCGGAACCGG
LOC_Os02g10090
Os.4266.1.S1_at--723--1451Chr02:5254486..5254510 (25 bp)
AGAAGCAGCCAACCTCCAAGCGGAG
LOC_Os02g10090
Os.4266.1.S1_at--534--8011Chr02:5254465..5254489 (25 bp)
GGAGGCGCCTCTTCAGAGACCAACA
LOC_Os02g10090
Os.4266.1.S1_at--153--10351Chr02:5254393..5254417 (25 bp)
TTTAGCACTTTAGCGTGTGCGCCTA
LOC_Os02g10090
Os.4266.1.S1_at--722--9971Chr02:5254370..5254394 (25 bp)
TACCTGCTCTCGTGTTGTATGTAGA
LOC_Os02g10090
Os.4266.1.S1_at--17--371Chr02:5254324..5254348 (25 bp)
ATAATAGCCCGCTGTGGTTTTGCCT
LOC_Os02g10090
Os.4266.1.S1_at--773--7871Chr02:5254309..5254333 (25 bp)
GGTTTTGCCTAGTGTCTGTACAACA
LOC_Os02g10090
Os.4266.1.S1_at--767--1151Chr02:5254285..5254309 (25 bp)
AGTCGGGCGACATAGCTCATCTCGT
LOC_Os02g10090
Os.4266.1.S1_at--716--3551Chr02:5254268..5254292 (25 bp)
CATCTCGTGCTAGCTCGTGTAACAG
LOC_Os02g10090
Os.4266.1.S1_at--681--6431Chr02:5254199..5254223 (25 bp)
GATCAGGCAGCTTCGATTTTTCCAA
LOC_Os02g10090
Target Sequence 
GCTATGCGCGCAAAGAACACCTATCAGGAAGCTCACCCGGAACCGGGGCCTGGTGATGCAGCAGGACCAGATGGTGGTCG
CGGAGACGCCCGAGGAGAAGCAGCCAACCTCCAAGCGGAGGCGCCTCTTCAGAGACCAACAATCTTGAAGCGAAACCCCC
CCTGCCCTGCTCGTCGGCTGCTGTAGTTTTTAGCACTTTAGCGTGTGCGCCTACCTGCTCTCGTGTTGTATGTAGAGGGA
GAGATCTATTATAAGTTATAATAGCCCGCTGTGGTTTTGCCTAGTGTCTGTACAACAGTCGGGCGACATAGCTCATCTCG
TGCTAGCTCGTGTAACAGCTTAGATGTAACTAATGTTCTTCTTTTAACTCTATTAGAATTTAGATCAGGCAGCTTCGATT
TTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis