Browse Element(s) Details


Os.51857.1.S1_at

Description gb:AK064096.1
DB_XREF= gi:32974114
TID=Os.51857.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F11, full insert sequence.
FL= gb:AK064096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1006011/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0005634cellular_componentnucleus
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51857.1.S1_at--252--191Chr02:5241172..5241196 (25 bp)
ATTTCTGCACAGTCCCAGGTTGATA
LOC_Os02g10060
Os.51857.1.S1_at--214--5251Chr02:5241494..5241518 (25 bp)
GAATCTTCTTGCACAAATGGTCTTT
LOC_Os02g10060
Os.51857.1.S1_at--502--7811Chr02:5241512..5241536 (25 bp)
GGTCTTTCAGCCAATGATTTGCTCA
LOC_Os02g10060
Os.51857.1.S1_at--939--2331Chr02:5241536..5241560 (25 bp)
AAAGAGGCGTCTGCCAACGCACAAG
LOC_Os02g10060
Os.51857.1.S1_at--24--6031Chr02:5241774..5241798 (25 bp)
GAGAGGAAGCAACTCCACTGCTTGA
LOC_Os02g10060
Os.51857.1.S1_at--688--3331Chr02:5241789..5241813 (25 bp)
CACTGCTTGAAGGAATTGCTCTTTT
LOC_Os02g10060
Os.51857.1.S1_at--28--2631Chr02:5241886..5241910 (25 bp)
AACCGAAGCCCGTTATCAGCATAAG
LOC_Os02g10060
Os.51857.1.S1_at--911--2811Chr02:5241908..5241932 (25 bp)
AAGTTGATTCTAGCCGAGCTTCGTC
LOC_Os02g10060
Os.51857.1.S1_at--27--671Chr02:5241959..5241983 (25 bp)
ATGCAATCCTGTGATGTAGCCCGAC
LOC_Os02g10060
Os.51857.1.S1_at--694--6971Chr02:5241974..5241998 (25 bp)
GTAGCCCGACTTTTTGACAGCTTTA
LOC_Os02g10060
Os.51857.1.S1_at--482--6551Chr02:5242057..5242081 (25 bp)
GATTAAACTCTTTGCAGTCCAGCTA
LOC_Os02g10060
Target Sequence 
ATTTCTGCACAGTCCCAGGTTGATATAAGTGCCAGCGAGACTGATTCTTCTATCAACATCAGCAAGGAAGAAGAATCTTC
TTGCACAAATGGTCTTTCAGCCAATGATTTGCTCAAAGAGGCGTCTGCCAACGCACAAGTACAACTTGAAAAGGAACGGA
AGGCTATAGAGCAGTCTTTATCTGACATAGTGGGTGTTCAGATGAAGGAAATCCAGGATAAAATACGTCGTTTCGAGCAG
AAGGAGCTGCTGATGGAGAAAGAGAGGAAGCAACTCCACTGCTTGAAGGAATTGCTCTTTTCTGATCAGCTAGCTGTTGT
GCAGCACCAACGCAGGCCCCCGGCTGTCACCACAGAGAGCAAGGACGATGAGAAACCGAAGCCCGTTATCAGCATAAGTT
GATTCTAGCCGAGCTTCGTCAATTGACATGGCATTAGTATGATACAATGCAATCCTGTGATGTAGCCCGACTTTTTGACA
GCTTTAGGTAGTAGAATATTCAAAAACTGTGATTAGCTGTAGTATGATTGTATGAATGGTGTTTGATTAAACTCTTTGCA
GTCCAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis