Browse Element(s) Details


Os.51068.1.S1_at

Description gb:AK060499.1
DB_XREF= gi:32970517
TID=Os.51068.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E12, full insert sequence.
FL= gb:AK060499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1002011/11Mitotic spindle checkpoint component mad3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51068.1.S1_at--862--271Chr02:5211452..5211476 (25 bp)
ATAGGCCACTTGCAGTTTACACAGA
LOC_Os02g10020
Os.51068.1.S1_at--265--5211Chr02:5211480..5211504 (25 bp)
GAATTCGTTACCTAGTCATGGCCTT
LOC_Os02g10020
Os.51068.1.S1_at--1030--1151Chr02:5211493..5211517 (25 bp)
AGTCATGGCCTTGCTAGAACCAGGA
LOC_Os02g10020
Os.51068.1.S1_at--58--4491Chr02:5211529..5211553 (25 bp)
GCCTGGCAGACCCTTGGATCACAAG
LOC_Os02g10020
Os.51068.1.S1_at--265--6231Chr02:5211579..5211603 (25 bp)
GAGGCCTGCTAAATGGACATCACAC
LOC_Os02g10020
Os.51068.1.S1_at--205--511Chr02:5211746..5211770 (25 bp)
ATCGAGGGCAGCAGTTCAGCCGACT
LOC_Os02g10020
Os.51068.1.S1_at--1057--4211Chr02:5211765..5211789 (25 bp)
CCGACTCGTGTAAGCTCCATTGAAG
LOC_Os02g10020
Os.51068.1.S1_at--698--5771Chr02:5211801..5211926 (25 bp)
GACGAATGCGCCGAGGAACCAGTTC
LOC_Os02g10020
Os.51068.1.S1_at--326--8031Chr02:5212102..5212126 (25 bp)
GGAGAATCCTCTGCGGAATTTCCCT
LOC_Os02g10020
Os.51068.1.S1_at--273--9771Chr02:5212162..5212186 (25 bp)
TAATGCTGTATTTCGATCTTCTTTT
LOC_Os02g10020
Os.51068.1.S1_at--408--4451Chr02:5212262..5212286 (25 bp)
GCCTTTTTAGGCTATCCATGAGTGT
LOC_Os02g10020
Target Sequence 
ATAGGCCACTTGCAGTTTACACAGATGAGAATTCGTTACCTAGTCATGGCCTTGCTAGAACCAGGAGCAACAACACGGCC
TGGCAGACCCTTGGATCACAAGCAGATCGGAACAAAGAAAATAACATGAGGCCTGCTAAATGGACATCACACAAGATTCC
TCAGAAGGTTGGATCGAGGGCAGCAGTTCAGCCGACTCGTGTAAGCTCCATTGAAGTCTTCGTAGATGACGAATGCGCCG
AGGAACCAGTTCCCCAAGTGCCAAAGAGTACAAAACCATCTATTCTGAAGCTTAGGCAAGCAACAAGCAGAAACCTCAAG
CAGGAAACTGAACTGCTTATGGAGAATCCTCTGCGGAATTTCCCTCTAACCAGCCTTAGATAATCAATATTTATGTGGTG
TAATGCTGTATTTCGATCTTCTTTTACCAATTTATTGTTTGAGTGTTTGTGACATTATGCTGAAATAAGCTTTAGCCTCT
AAAGCTTAGGCAGGCAAAGAGCCTTTTTAGGCTATCCATGAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis