Browse Element(s) Details


Os.4258.1.A1_at

Description gb:AK101237.1
DB_XREF= gi:32986446
TID=Os.4258.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031K13, full insert sequence.
FL= gb:AK101237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1001011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4258.1.A1_at--671--2351Chr02:5208116..5208140 (25 bp)
AAAGCTGAACCTGAGCTGCTGCGGA
LOC_Os02g10010
Os.4258.1.A1_at--400--9111Chr02:5208132..5208156 (25 bp)
TGCTGCGGAGGGAGGTTCCACTCAC
LOC_Os02g10010
Os.4258.1.A1_at--991--6151Chr02:5208143..5208167 (25 bp)
GAGGTTCCACTCACATCCGGCAAGA
LOC_Os02g10010
Os.4258.1.A1_at--1146--5111Chr02:5208162..5208186 (25 bp)
GCAAGACCAAGAAAGCCCCTAAGAT
LOC_Os02g10010
Os.4258.1.A1_at--388--5531Chr02:5208172..5208196 (25 bp)
GAAAGCCCCTAAGATAACCTTCAAG
LOC_Os02g10010
Os.4258.1.A1_at--776--2731Chr02:5208194..5208218 (25 bp)
AAGAATGAACCTCGCCATTCGGCTC
LOC_Os02g10010
Os.4258.1.A1_at--896--3591Chr02:5208209..5208233 (25 bp)
CATTCGGCTCCGCAATCTGATTGGG
LOC_Os02g10010
Os.4258.1.A1_at--525--6531Chr02:5208242..5208266 (25 bp)
GATTCGGTGCCAGAGTTCGGTCCAG
LOC_Os02g10010
Os.4258.1.A1_at--150--6071Chr02:5208254..5208278 (25 bp)
GAGTTCGGTCCAGCTGATGAATACA
LOC_Os02g10010
Os.4258.1.A1_at--363--4631Chr02:5208281..5208305 (25 bp)
GCGTTACGGAAGAAGTACCTGCTGC
LOC_Os02g10010
Os.4258.1.A1_at--841--10031Chr02:5208593..5208617 (25 bp)
TAGAGCACTTGTTTGGAGTTCTTTT
LOC_Os02g10010
Target Sequence 
AAAGCTGAACCTGAGCTGCTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAA
GAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAGCTGATGAAT
ACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAG
GAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACA
GATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGC
TTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAACATTTAG
AGCACTTGTTTGGAGTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4258.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis