Browse Element(s) Details


Os.17436.1.S1_at

Description gb:AK100967.1
DB_XREF= gi:32986176
TID=Os.17436.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142I15, full insert sequence.
FL= gb:AK100967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1451011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein
LOC_Os04g14470Os.52238.1.S1_at2/114+8077818..8078825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14480OsAffx.26035.1.S1_at11/114+8081059..8081946hypothetical protein
LOC_Os04g14490NANA4+8082426..8085910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein
LOC_Os04g14510Os.17436.1.S1_at11/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_x_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14520NANA4+8110054..8112207Transposable element protein, putative, Transposase_28
LOC_Os04g14530NANA4+8113161..8113535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14540OsAffx.13818.1.S1_at11/114+8115965..8118262hypothetical protein
LOC_Os04g14550OsAffx.19542.3.S1_x_at5/114+8122380..8127818retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17436.1.S1_at--294--3211Chr04:8097772..8097796 (25 bp)
CAAGGCTCGGAAATGCAGGCGTCTT
LOC_Os04g14510
Os.17436.1.S1_at--953--6031Chr04:8097712..8097736 (25 bp)
GAGATCTAGCTTTGATTCGGCCTCT
LOC_Os04g14510
Os.17436.1.S1_at--307--311Chr04:8097677..8097701 (25 bp)
ATACCACCTTGTCGGATTCCAGTAG
LOC_Os04g14510
Os.17436.1.S1_at--997--671Chr04:8097644..8097668 (25 bp)
ATGACACCCCTATGGATAAGAGCCT
LOC_Os04g14510
Os.17436.1.S1_at--293--6751Chr04:8097568..8097592 (25 bp)
GTTCAATGCAGTGCTGCTGGCAATA
LOC_Os04g14510
Os.17436.1.S1_at--447--5571Chr04:8097522..8097546 (25 bp)
GAAAGTCAGATTTAGCGACCGCAGA
LOC_Os04g14510
Os.17436.1.S1_at--1119--5811Chr04:8097506..8097530 (25 bp)
GACCGCAGATCGGTTCACTTGTAAG
LOC_Os04g14510
Os.17436.1.S1_at--261--3571Chr04:8097464..8097488 (25 bp)
CATAGTTAATCCTTTTCTCGCCTAA
LOC_Os04g14510
Os.17436.1.S1_at--91--10311Chr04:8097451..8097475 (25 bp)
TTTCTCGCCTAACTGTAATGCAGGT
LOC_Os04g14510
Os.17436.1.S1_at--371--6971Chr04:8097384..8097408 (25 bp)
GTAGCGTCTGATGATTGCGCCCAAA
LOC_Os04g14510
Os.17436.1.S1_at--579--4951Chr04:8097352..8097376 (25 bp)
GCATTATGTGTATCAGCGTATCTAG
LOC_Os04g14510
Target Sequence 
CAAGGCTCGGAAATGCAGGCGTCTTGAACTGAAAGGGAGGAGAGTCAACGATACGAGGAAGAGATCTAGCTTTGATTCGG
CCTCTGATGATGATGATACCACCTTGTCGGATTCCAGTAGTGACAGAAATGACACCCCTATGGATAAGAGCCTAGAAGAT
AGTTTTGTTATAGCTAAGAATGCAGATTCAAGTTCATAGAGGTGGTTCAATGCAGTGCTGCTGGCAATACATTCGAATGG
AGTTGGTGAAGAAAGTCAGATTTAGCGACCGCAGATCGGTTCACTTGTAAGTTGTAACAGTAGTGTAACATAGTTAATCC
TTTTCTCGCCTAACTGTAATGCAGGTAGATTTGTTGAAGTAGCGTATCATGTAAGCAATTTGCAATTTGTAGCGTCTGAT
GATTGCGCCCAAAATAACAAGCATTATGTGTATCAGCGTATCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis