Browse Element(s) Details


Os.17476.1.S1_at

Description gb:AK058346.1
DB_XREF= gi:32968364
TID=Os.17476.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E02, full insert sequence.
FL= gb:AK058346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4810010/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein
LOC_Os02g48122Os.24137.1.A1_at11/112+29457961..29459791expressed protein
LOC_Os02g48130Os.27653.1.S1_at11/112+29459791..29462183expressed protein
LOC_Os02g48140Os.55371.1.S1_at4/112+29462598..29463092Hsp20/alpha crystallin family protein
LOC_Os02g48150Os.54450.1.S1_s_at11/112+29465553..29466701expressed protein
LOC_Os02g48150OsAffx.24777.1.S1_at11/112+29465553..29466701expressed protein
LOC_Os02g48160OsAffx.2996.1.S1_at9/112+29469057..29470272hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17476.1.S1_at--652--8691Chr02:29445304..29445328 (25 bp)
TGTGCATTCTTGGAGATTGACCTGT
LOC_Os02g48100
Os.17476.1.S1_at--636--6591Chr02:29445318..29445342 (25 bp)
GATTGACCTGTGATCTTTACTGAGC
LOC_Os02g48100
Os.17476.1.S1_at--373--1771Chr02:29445323..29445347 (25 bp)
ACCTGTGATCTTTACTGAGCAGACA
LOC_Os02g48100
Os.17476.1.S1_at--969--6411Chr02:29445329..29445353 (25 bp)
GATCTTTACTGAGCAGACAGTGCAG
LOC_Os02g48100
Os.17476.1.S1_at--1049--1951Chr02:29445366..29445390 (25 bp)
ACTGAACAGCGTTGTAGTGCTCATT
LOC_Os02g48100
Os.17476.1.S1_at--528--6931Chr02:29445379..29445403 (25 bp)
GTAGTGCTCATTGGGCAAAGCTTTT
LOC_Os02g48100
Os.17476.1.S1_at--821--5131Chr02:29445393..29445417 (25 bp)
GCAAAGCTTTTGCATTCTGGCTTGT
LOC_Os02g48100
Os.17476.1.S1_at--753--10351Chr02:29445494..29445518 (25 bp)
TTTTTTAGCAATACCTGACCAGTGA
LOC_Os02g48100
Os.17476.1.S1_at--677--311Chr02:29445504..29445528 (25 bp)
ATACCTGACCAGTGATAGATGAAAA
LOC_Os02g48100
Os.17476.1.S1_at--439--7051Chr02:29445537..29445561 (25 bp)
GTAACATAATTTCATTATCATCCCA
LOC_Os02g48100
Os.17476.1.S1_at--37--10171Chr02:29445552..29445577 (25 bp)
TATCATCCCAAAATGCTTTCGCCAA
NONE
Target Sequence 
TGTGCATTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTGAGAGNGTGACACTGAACAGCGTTGTAGT
GCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTNCGGTGCAGGTGAACAATCCTTTTTCAGATGCTGGCAAGATTGCAA
GTTACTACTAGTAGTATTTTATCAAACACTTTTTTTAGCAATACCTGACCAGTGATAGATGAAAAANAAATCAGTAACAT
AATTTCATTATCATCCCAAAATGCTTTCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis