Browse Element(s) Details


Os.17519.2.S1_at

Description gb:AK062010.1
DB_XREF= gi:32972028
TID=Os.17519.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E05, full insert sequence.
FL= gb:AK062010.1 gb:AK120880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0105410/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01020OsAffx.5673.1.S1_at11/118+3839..7735hypothetical protein
LOC_Os08g01030OsAffx.28968.1.S1_at11/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01030OsAffx.28968.1.S1_s_at10/118+12574..17853ZIP Zinc transporter family protein, expressed
LOC_Os08g01040Os.50424.1.S2_at11/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01040Os.50424.1.S1_at10/118+19941..27167Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g01054Os.17519.1.S1_at11/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01054Os.17519.2.S1_at10/118+29798..39772transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01070Os.6337.1.S1_at11/118+47929..51980expressed protein
LOC_Os08g01080Os.46922.1.S1_at10/118+52251..57016expressed protein
LOC_Os08g01090Os.25169.1.S1_at10/118+57228..61492B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17519.2.S1_at--858--10211Chr08:39282..39306 (25 bp)
TATTCCGGATCGTCGTTGTGTTCAA
LOC_Os08g01054
Os.17519.2.S1_at--452--271Chr08:39306..39330 (25 bp)
ATATGTGAAGCATCCAGTTCCTCTC
LOC_Os08g01054
Os.17519.2.S1_at--115--3151Chr08:39347..39371 (25 bp)
AATTCAACTGGCAAGCACCGCAGGT
LOC_Os08g01054
Os.17519.2.S1_at--467--7311Chr08:39393..39417 (25 bp)
GTGCTGTGCTCATAGATTATCTTGT
LOC_Os08g01054
Os.17519.2.S1_at--934--3611Chr08:39413..39437 (25 bp)
CTTGTGCTGCTTTAAGTTTCCGTAG
LOC_Os08g01054
Os.17519.2.S1_at--849--10272Chr08:39442..39466 (25 bp)
TTTGCGTGATGTCATTGCATGCACT
LOC_Os08g01054
Os.17519.2.S1_at--787--7575Chr08:39489..39513 (25 bp)
GGGCTGTACTTATGCTGATCTAATT
LOC_Os08g01054
Os.17519.2.S1_at--16--8791Chr08:39525..39549 (25 bp)
TGTTATATCATATTCGTCAGGCTGA
LOC_Os08g01054
Os.17519.2.S1_at--79--7511Chr08:39624..39648 (25 bp)
GTGGTCTGTCTTGATTATTCTGTGA
LOC_Os08g01054
Os.17519.2.S1_at--305--6191Chr08:39735..39760 (25 bp)
GATGGACATACCAACCAACCTTCAG
LOC_Os08g01054
Os.17519.2.S1_at--634--4371NONE
CCAACCTTCAGGTTTGTTGCTATAA
NONE
Target Sequence 
TATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCNAAAGAAAGCTCCAATTCAACTGGCAA
GCACCGCAGGTGNCTGCTGAAATCCCCCATATGTGCTGTGCTCATAGATTATCTTGTGCTGCTTTAAGTTTCCGTAGAAG
GTTTGCGTGATGTCATTGCATGCACTGGGGGACGNCCTTGGCCCCTGGGGGCTGTACTTATGCTGATCTAATTGTAAGCT
TGGATGTTATATCATATTCGTCAGGCTGANTGCAGCTAGCNAGAANNACCNAAGAAGGAAATGCTATGACTTTGACCCAA
AGAAAGGTTACTGTTTTGTGTGANATATGTGGTCTGTCTTGATTATTCTGTGAGAAGGTCTGCATGTAGCTAGAAAAAAA
AGTAGGTTTCATATATGTACATGAAACTAATTAATGGTTGATGTTTCCGCAATCAAATTGTGATGGACATACCAACCAAC
CTTCAGGTTTGTTGCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17519.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis