Browse Element(s) Details


Os.17546.4.S1_x_at

Description gb:AK073575.1
DB_XREF= gi:32983598
TID=Os.17546.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046C07, full insert sequence.
FL= gb:AK073575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4879010/11expressed protein
LOC_Os05g487701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17546.4.S1_x_at--905--6291Chr05:27875843..27875867 (25 bp)
GATGATCCACACAGGCTTGCTAACA
LOC_Os05g48790
Os.17546.4.S1_x_at--997--2511NONE
AAGATTAGCCCGAGGTGCCAAAAAT
NONE
Os.17546.4.S1_x_at--143--851Chr05:27875636..27875660 (25 bp)
ATGGAACTCTGTTTTTCACACATTA
LOC_Os05g48790
Os.17546.4.S1_x_at--741--9891Chr05:27875611..27875635 (25 bp)
TACTATGCGCGCGAGTTCTATGATG
LOC_Os05g48790
Os.17546.4.S1_x_at--844--10031Chr05:27875472..27875592 (25 bp)
TAGATTCGGGTAGGGTTGCTGCCTT
LOC_Os05g48790
Os.17546.4.S1_x_at--822--4571Chr05:27875447..27875471 (25 bp)
GCGCAGGGATCTTTTCTACAAGCTC
LOC_Os05g48790
Os.17546.4.S1_x_at--716--8912Chr05:27875399..27875423 (25 bp)
TGAGCTGCCAAGTCACATTGCGAGA
LOC_Os05g48790
Os.17546.4.S1_x_at--7--2871Chr05:27875355..27875379 (25 bp)
AAGTGTCATGCTGGTCGTTTAGCCT
LOC_Os05g48790
Os.17546.4.S1_x_at--959--2351Chr05:27875137..27875161 (25 bp)
AAAGCCTTTTGTATGGCTTCCGGCA
LOC_Os05g48790
Os.17546.4.S1_x_at--1085--4911Chr05:27875122..27875146 (25 bp)
GCTTCCGGCATGTTAGGACTCTTTG
LOC_Os05g48790
Os.17546.4.S1_x_at--168--5711Chr05:27875106..27875130 (25 bp)
GACTCTTTGGGAAGTGCATCACTGA
LOC_Os05g48790
Target Sequence 
GATGATCCACACAGGCTTGCTAACATGTATAAACAAATTCTTCGATGACTGGGATATTAACCCGGATGGATGGACATGTA
CGTACCACACAAAGATTAGCCCGAGGTGCCAAAAATGGAACTCTGTTTTTCACACATTATACTATGCGCGCGAGTTCTAT
GATGGCAAGCTGAGCAATGTTCTAGATTCGGGTAGGGTTGCTGCCTTGCGCAGGGATCTTTTCTACAAGCTCCTGACTAT
GGAAGGGAACAGCGCTGAGCTGCCAAGTCACATTGCGAGATACTTGGAGTAGTTGTACCAAGTGTCATGCTGGTCGTTTA
GCCTTTTGCTAGTATGTTTATGCTGCAAGTATCTGACGAGAACTTAGGAAGTTGTCTTGTGACCAGGATAATTCCCAAGA
AATCTCCTTTATCTAAAAAAATATTCTAGGCGTCTAGATAAGCCAGTGTTTTCTATTGATAATAGCTTGCACTGAATAAA
GGTATAGCAGCAAGTTGTTTACTAGTAGCATGTAGCAAAAGCCTTTTGTATGGCTTCCGGCATGTTAGGACTCTTTGGGA
AGTGCATCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17546.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis