Browse Element(s) Details


Os.7761.1.S1_at

Description gb:AK098862.1
DB_XREF= gi:32984071
TID=Os.7761.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O09, full insert sequence.
FL= gb:AK098862.1 gb:AK061788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4875010/113-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein
LOC_Os05g48720OsAffx.1319.1.S1_at1/115+27840877..27843589transposon protein, putative, Mariner sub-class
LOC_Os05g48730OsAffx.15155.1.S1_at11/115+27845754..27846005hypothetical protein
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009103biological_processlipopolysaccharide biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7761.1.S1_at--633--7471Chr05:27853129..27853153 (25 bp)
GTGTGGTTACATGTTTGATTCGACT
LOC_Os05g48750
Os.7761.1.S1_at--579--5731Chr05:27853108..27853132 (25 bp)
GACTGTTCGTGTTCTAGTATAGCCT
LOC_Os05g48750
Os.7761.1.S1_at--655--6891Chr05:27853092..27853116 (25 bp)
GTATAGCCTTTCTGAAGAGCACATG
LOC_Os05g48750
Os.7761.1.S1_at--114--1971Chr05:27853021..27853045 (25 bp)
ACTGTTTTGAGTGTGCATAGCGTTG
LOC_Os05g48750
Os.7761.1.S1_at--195--311Chr05:27853005..27853029 (25 bp)
ATAGCGTTGCACTTCTTTCTTACAA
LOC_Os05g48750
Os.7761.1.S1_at--482--3571Chr05:27852969..27852993 (25 bp)
CATAGCGCATCTCCATTTACTGAAA
LOC_Os05g48750
Os.7761.1.S1_at--577--851Chr05:27852945..27852969 (25 bp)
ATGGCAGTGCACCTACTTGTATTTA
LOC_Os05g48750
Os.7761.1.S1_at--1115--9931Chr05:27852913..27852937 (25 bp)
TACCAGGCCATACAGTTCGTTTCGA
LOC_Os05g48750
Os.7761.1.S1_at--445--9391Chr05:27852897..27852921 (25 bp)
TCGTTTCGAGTTTGTTCTTGTTAAT
LOC_Os05g48750
Os.7761.1.S1_at--1014--4731Chr05:27852869..27852893 (25 bp)
GCTGTTAATGTTAGCGCTTCTCCAT
LOC_Os05g48750
Os.7761.1.S1_at--118--4591Chr05:27852856..27852880 (25 bp)
GCGCTTCTCCATCGTTATTGTTATA
NONE
Target Sequence 
GTGTGGTTACATGTTTGATTCGACTGTTCGTGTTCTAGTATAGCCTTTCTGAAGAGCACATGAGGTTAATTTGAGTTTGT
AAATTAGAAGCTGTTTGAAAGTTGAATTACTGTTTTGAGTGTGCATAGCGTTGCACTTCTTTCTTACAACGTTGAAGGAA
CATAGCGCATCTCCATTTACTGAAATGGCAGTGCACCTACTTGTATTTACTGTAATTACCAGGCCATACAGTTCGTTTCG
AGTTTGTTCTTGTTAATTAAGCTGTTAATGTTAGCGCTTCTCCATCGTTATTGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis