Browse Element(s) Details


OsAffx.15155.1.S1_at

Description tigr:9633.m04557
TID=OsAffx.15155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4873011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein
LOC_Os05g48720OsAffx.1319.1.S1_at1/115+27840877..27843589transposon protein, putative, Mariner sub-class
LOC_Os05g48730OsAffx.15155.1.S1_at11/115+27845754..27846005hypothetical protein
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15155.1.S1_at--84--7471Chr05:27845788..27845812 (25 bp)
GTGTGACGACGCTGATGTGCATAAT
LOC_Os05g48730
OsAffx.15155.1.S1_at--240--5791Chr05:27845792..27845816 (25 bp)
GACGACGCTGATGTGCATAATCCTG
LOC_Os05g48730
OsAffx.15155.1.S1_at--112--5811Chr05:27845795..27845819 (25 bp)
GACGCTGATGTGCATAATCCTGCTG
LOC_Os05g48730
OsAffx.15155.1.S1_at--408--6271Chr05:27845801..27845825 (25 bp)
GATGTGCATAATCCTGCTGATTCTC
LOC_Os05g48730
OsAffx.15155.1.S1_at--307--4971Chr05:27845806..27845830 (25 bp)
GCATAATCCTGCTGATTCTCTCGTA
LOC_Os05g48730
OsAffx.15155.1.S1_at--103--9771Chr05:27845809..27845833 (25 bp)
TAATCCTGCTGATTCTCTCGTACTC
LOC_Os05g48730
OsAffx.15155.1.S1_at--587--111Chr05:27845820..27845844 (25 bp)
ATTCTCTCGTACTCCGCGGTGACGG
LOC_Os05g48730
OsAffx.15155.1.S1_at--443--8371Chr05:27845896..27845920 (25 bp)
GGCGTTTCAGGAAGATAATGCGAGA
LOC_Os05g48730
OsAffx.15155.1.S1_at--749--1271Chr05:27845908..27845932 (25 bp)
AGATAATGCGAGAGGAGACGACGCT
LOC_Os05g48730
OsAffx.15155.1.S1_at--924--8391Chr05:27845943..27845967 (25 bp)
GGCGCCGCCATTGGTGAGTCTAAGA
LOC_Os05g48730
OsAffx.15155.1.S1_at--1017--4151Chr05:27845945..27845969 (25 bp)
CGCCGCCATTGGTGAGTCTAAGAGG
LOC_Os05g48730
Target Sequence 
GTGTGACGACGCTGATGTGCATAATCCTGCTGATTCTCTCGTACTCCGCGGTGACGGCAGAGGCCGGACGGCAATGGGAA
GGGAGGGAGCCTACGGTGGCGGCGAGGGGGCGTTTCAGGAAGATAATGCGAGAGGAGACGACGCTGGACGACGGCGGCGC
CGCCATTGGTGAGTCTAAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis