Browse Element(s) Details


Os.17597.1.S1_at

Description gb:AK061591.1
DB_XREF= gi:32971609
TID=Os.17597.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B05, full insert sequence.
FL= gb:AK061591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os02g40020OsAffx.12421.1.S1_at11/112+24222964..24223346hypothetical protein
LOC_Os02g40030Os.10776.1.S1_at11/112+24229799..24233912UDP-sugar transporter sqv-7, putative, expressed
LOC_Os02g40040Os.17597.1.S1_at11/112+24234223..24236689expressed protein
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17597.1.S1_at--267--4531Chr02:24236340..24236359 (20 bp)
GCCCCTCGATTTTCCCATCGAATGG
LOC_Os02g40040
Os.17597.1.S1_at--54--8031Chr02:24234610..24234634 (25 bp)
GGAGGAGGCCTGATATCTTCCCAAA
LOC_Os02g40040
Os.17597.1.S1_at--779--431Chr02:24234596..24234620 (25 bp)
ATCTTCCCAAAATTCAGCCCTATGA
LOC_Os02g40040
Os.17597.1.S1_at--398--10131Chr02:24234576..24234600 (25 bp)
TATGAAAACACCATTGCCCCATCCA
LOC_Os02g40040
Os.17597.1.S1_at--694--571Chr02:24234556..24234580 (25 bp)
ATCCATTGCCAGCTGATGATCCTCT
LOC_Os02g40040
Os.17597.1.S1_at--346--6291Chr02:24234443..24234467 (25 bp)
GATGACCCGGACAAGCCAACGGAGT
LOC_Os02g40040
Os.17597.1.S1_at--173--751Chr02:24234380..24234404 (25 bp)
ATGTTTAGATCTGCCATATCCTTGA
LOC_Os02g40040
Os.17597.1.S1_at--73--571Chr02:24234363..24234387 (25 bp)
ATCCTTGAGAGAACGTCATAGGTCT
LOC_Os02g40040
Os.17597.1.S1_at--1100--3411Chr02:24234332..24234356 (25 bp)
CAGGTTTGACCTGTTAGTTCTGCCG
LOC_Os02g40040
Os.17597.1.S1_at--72--10071Chr02:24234300..24234324 (25 bp)
TAGGCTGTAGACACGTTTGTTTTGG
LOC_Os02g40040
Os.17597.1.S1_at--949--8191Chr02:24234247..24234271 (25 bp)
GGAAGTTTTGTCTGACTGATCACAA
LOC_Os02g40040
Target Sequence 
GCCCCTCGATTTTCCCATCGAATGGGAGAAACCAAAGCCTGGGAGGAGGCCTGATATCTTCCCAAAATTCAGCCCTATGA
AAACACCATTGCCCCATCCATTGCCAGCTGATGATCCTCTGGATGATGATGAGGAGGAGGAAGAGGAAGAACCACANCCT
CAGGAGGAACCACAGGAGGATGATCCTGACAAGGAAGAACCTGAGGAGGATGACCCGGACAAGCCAACGGAGTAATTTTG
GATGATNTGGGTTATGTTAGATAAAAACACTATGTTTAGATCTGCCATATCCTTGAGAGAACGTCATAGGTCTCNNGGTC
AGGTTTGACCTGTTAGTTCTGCCGNCTCATATAGGCTGTAGACACGTTTGTTTTGGGAGCACCCCNTGAGCTTTTCTAAA
GCCATGGAAGTTTTGTCTGACTGATCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis