Browse Element(s) Details


Os.17640.1.S1_at

Description gb:CB644776
DB_XREF= gi:29639767
DB_XREF=OSJNEb06C05.r
CLONE=OSJNEb06C05
TID=Os.17640.1
CNT=30
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.17640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145P19, full insert sequence
FL= gb:AK122157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5415011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17640.1.S1_at--895--4651Chr03:30980447..30980471 (25 bp)
GCGTGCATTAGGCATTGCTGCTGAA
LOC_Os03g54150
Os.17640.1.S1_at--1151--5152Chr07:17193366..17193389 (23 bp)
GCAAGCTCTTTTGAAATTCCATCCG
NONE
Os.17640.1.S1_at--424--91Chr03:30981567..30981591 (25 bp)
ATTCCATCCGGACAGAGTATCAAGA
LOC_Os03g54150
Os.17640.1.S1_at--840--3091Chr03:30981671..30981695 (25 bp)
AATACTAGCATATCCCTGTTCAGTT
LOC_Os03g54150
Os.17640.1.S1_at--1122--2191Chr03:30981700..30981724 (25 bp)
ACAACCTCTGACCAATATCTTTATG
LOC_Os03g54150
Os.17640.1.S1_at--827--10411Chr03:30981747..30981771 (25 bp)
TTATTCATAGGCTGAGTTCTCATCA
LOC_Os03g54150
Os.17640.1.S1_at--612--391Chr03:30981768..30981792 (25 bp)
ATCAGCCGGCACATAGTTCCACAGT
LOC_Os03g54150
Os.17640.1.S1_at--492--6691Chr03:30981783..30981807 (25 bp)
GTTCCACAGTTCTGAATGCCATTCT
LOC_Os03g54150
Os.17640.1.S1_at--646--3011Chr03:30981817..30981841 (25 bp)
AATGCTTAGCATTCGTTATCCTCTC
LOC_Os03g54150
Os.17640.1.S1_at--309--4951Chr03:30981825..30981849 (25 bp)
GCATTCGTTATCCTCTCTTGAGAAT
LOC_Os03g54150
Os.17640.1.S1_at--899--5911Chr03:30981881..30981905 (25 bp)
GAGCTTGGGCGCCTTGGTATATTTC
LOC_Os03g54150
Target Sequence 
GCGTGCATTAGGCATTGCTGCTGAAGGTGGTGAGGTTAAAGCTGCTTACAAGCAAGCTCTTTTGAAATTCCATCCGGACA
GAGTATCAAGAAGTGATATGTATCAACAGGTCAAAGCAGAGGAGACATTCAAGTTCATTTCACGCCTGAAAGAGAAGATG
CTTCGAGTTTAATACTAGCATATCCCTGTTCAGTTAAATACAACCTCTGACCAATATCTTTATGTTAAAGTTGTGGCTAG
ATTAATTTATTCATAGGCTGAGTTCTCATCAGCCGGCACATAGTTCCACAGTTCTGAATGCCATTCTTAGAAGACTAATG
CTTAGCATTCGTTATCCTCTCTTGAGAATTTTTAGTGGTAGGGGAGTCAGCAGTGACAGTGAGCTTGGGCGCCTTGGTAT
ATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis