Browse Element(s) Details


Os.17691.1.S1_at

Description gb:AK065020.1
DB_XREF= gi:32975038
TID=Os.17691.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013054J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F20, full insert sequence.
FL= gb:AK099624.1 gb:AB095096.1 gb:AK065020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3562011/11RSH2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35610NANA8+22290376..22291260transposon protein, putative, unclassified
LOC_Os08g35620Os.17691.1.S1_at11/118+22313705..22317627RSH2, putative, expressed
LOC_Os08g35630Os.8851.1.S1_at11/118+22329557..22332044MTD1, putative, expressed
LOC_Os08g35640OsAffx.6036.1.S1_at11/118+22335917..22336445hypothetical protein
LOC_Os08g35650OsAffx.6037.1.S1_at11/118+22342214..22346327hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17691.1.S1_at--145--10031Chr08:22317027..22317051 (25 bp)
TAGTCCAAGATGCAGCCCTTACAGC
LOC_Os08g35620
Os.17691.1.S1_at--1018--6111Chr08:22317078..22317102 (25 bp)
GAGGGTTAACCACAAGCCCATAAGT
LOC_Os08g35620
Os.17691.1.S1_at--17--8911Chr08:22317102..22317126 (25 bp)
TGACCCTAACCGGAAACTGTGCATG
LOC_Os08g35620
Os.17691.1.S1_at--808--8191Chr08:22317183..22317207 (25 bp)
GGAAGAGATCCAGCGCATGTATGAA
LOC_Os08g35620
Os.17691.1.S1_at--481--8231Chr08:22317246..22317270 (25 bp)
GGCAAGCTGACGGTGTCACGACTAC
LOC_Os08g35620
Os.17691.1.S1_at--414--1731Chr08:22317269..22317293 (25 bp)
ACCATGTTAACCTCCTGTTGTACAA
LOC_Os08g35620
Os.17691.1.S1_at--1030--2611Chr08:22317301..22317325 (25 bp)
AACCTCCATTTGCTTCCTTGTATAT
LOC_Os08g35620
Os.17691.1.S1_at--150--7431Chr08:22317407..22317431 (25 bp)
GTGTTCTGATCCAAAGCTGTCTATA
LOC_Os08g35620
Os.17691.1.S1_at--327--2231Chr08:22317470..22317494 (25 bp)
AAATTCAGATCCTCCCAAGATTCAG
LOC_Os08g35620
Os.17691.1.S1_at--168--4451Chr08:22317513..22317537 (25 bp)
GCCTTGTCCGTGTGTTGTTGTAATA
LOC_Os08g35620
Os.17691.1.S1_at--879--2331Chr08:22317590..22317614 (25 bp)
AAAGCAGCCACCATCAGTATTCGGT
LOC_Os08g35620
Target Sequence 
TAGTCCAAGATGCAGCCCTTACAGCTTCCCACTGAAAGAGGAATTGCGCCCGAGGGTTAACCACAAGCCCATAAGTGACC
CTAACCGGAAACTGTGCATGGGAGATGTGGTGGAGCTGACGCCTGCGCTNCCACACAAGTCGCTAACTGAGTATCGGGAA
GAGATCCAGCGCATGTATGAACGAGGCGGGTTTGCCCTCGCCACCACCCGGGACGGTCCGGCAAGCTGACGGTGTCACGA
CTACCATGTTAACCTCCTGTTGTACAATGCCCTCAACCTCCATTTGCTTCCTTGTATATATCCCAGATACTAATTCTTGC
AGGAGAGAGCCAAATGAACACCCCCAGCTGAATTGTCAAAGGTGTGGAGTTAGGTGTTCAGTGTTCTGATCCAAAGCTGT
CTATAACAGTAAACAGTTTACAAGCTGATCAAATCTGTACTAGAAATTCAGATCCTCCCAAGATTCAGGAGGGGGGGACA
TTCACTGCCTTGTCCGTGTGTTGTTGTAATACATCTACTGTATATTCCAGTGGCAATTCTGAACTTTTTTTGCTTGGCTA
TGAAAAGCAGCCACCATCAGTATTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis