Browse Element(s) Details


Os.17696.1.S1_at

Description gb:BI813405
DB_XREF= gi:16579310
DB_XREF=K005G05
CLONE=K005G05
TID=Os.17696.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17696 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2417011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24160NANA11+13235940..13241490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24170OsAffx.18982.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24170Os.17696.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17696.1.S1_at--374--7471Chr11:13244619..13244643 (25 bp)
GTGTGCACTCAACCATTCTGTTTAA
LOC_Os11g24170
Os.17696.1.S1_at--463--291Chr11:13244593..13244617 (25 bp)
ATAGTAGTCTCCTCAGATATCTGTA
LOC_Os11g24170
Os.17696.1.S1_at--1047--4711Chr11:13244503..13244527 (25 bp)
GCTGGATCAATAACTACTGTCTACA
LOC_Os11g24170
Os.17696.1.S1_at--565--7471Chr11:13244083..13244107 (25 bp)
GTGTGTTTTGGAGGATCACCAAGCT
LOC_Os11g24170
Os.17696.1.S1_at--564--5071Chr11:13243975..13243999 (25 bp)
GCAGCTGCACTGTTTTACTGTGGTA
LOC_Os11g24170
Os.17696.1.S1_at--863--7851Chr11:13243954..13243978 (25 bp)
GGTAGTATTGCTCTATTCTGGTTCT
LOC_Os11g24170
Os.17696.1.S1_at--267--111Chr11:13243940..13243964 (25 bp)
ATTCTGGTTCTGCATTACCGATCTT
LOC_Os11g24170
Os.17696.1.S1_at--531--4951Chr11:13243929..13243953 (25 bp)
GCATTACCGATCTTCATGGCTGTGA
LOC_Os11g24170
Os.17696.1.S1_at--614--1411Chr11:13243884..13243908 (25 bp)
AGACAAATCGATCACCATTGCCCTT
LOC_Os11g24170
Os.17696.1.S1_at--532--1091Chr11:13243803..13243827 (25 bp)
AGTGGGACTGGGAGCCCATGCCCTT
LOC_Os11g24170
Os.17696.1.S1_at--47--612Chr11:13243786..13243810 (25 bp)
ATGCCCTTTCTGCAGAACTTATTTG
LOC_Os11g24170
Target Sequence 
GTGTGCACTCAACCATTCTGTTTAATATAGTAGTCTCCTCAGATATCTGTAACTGGATGGAGCTTGAAATGAAGATGCCA
TGACTTCANCAGATTAGTTAGGCTGCTTCATCACCAGCTGGATCAATAACTACTGTCTACATGAAGTCAAGACAACACAA
GGTTTTAGCAANCCGATGGGGGATTTATTTTTGTGTGTTTTGGAGGATCACCAAGCTGGGAGCATGGCAGCGATCACTAT
GGCTGCAANCAAGAACTGGGGGAAGCAATGAGCTCATGGTCCTAACCAAGTAAGCAGCTGGCAGCTGCACTGTTTTACTG
TGGTAGTATTGCTCTATTCTGGTTCTGCATTACCGATCTTCATGGCTGTGAATAGCTAGGAATTTTTTAACAGACAAATC
GATCACCATTGCCCTTCTCTTTTCCCCTTGAGCATTTTGGTTAGGTGATAATGGGGAAGTCTGCACTCCGAGAGTGGGAC
TGGGAGCCCATGCCCTTTCTGCAGAACTTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis