Browse Element(s) Details


OsAffx.18982.1.S1_at

Description tigr:9639.m02131
TID=OsAffx.18982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to XA1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2417011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24160NANA11+13235940..13241490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24170OsAffx.18982.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24170Os.17696.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18982.1.S1_at--206--2991Chr11:13245621..13245645 (25 bp)
AATGTGTTGGGCTGTCTGCTCTAGA
LOC_Os11g24170
OsAffx.18982.1.S1_at--667--7171Chr11:13245608..13245632 (25 bp)
GTCTGCTCTAGAGGGTTTGCATTCC
LOC_Os11g24170
OsAffx.18982.1.S1_at--1039--9911Chr11:13245564..13245588 (25 bp)
TACGGATTTTTCAATGCCCTAGTTT
LOC_Os11g24170
OsAffx.18982.1.S1_at--133--2131Chr11:13245510..13245534 (25 bp)
ACAGGCCAGGTTTCTCTTTATATCT
LOC_Os11g24170
OsAffx.18982.1.S1_at--1031--3631Chr11:13245430..13245454 (25 bp)
CTTCCATCTCTTCGACATTTAGTGT
LOC_Os11g24170
OsAffx.18982.1.S1_at--689--9611Chr11:13245171..13245191 (21 bp)
TCATGTTGTCAATCAAGGCTTGTCC
LOC_Os11g24170
OsAffx.18982.1.S1_at--1126--71Chr11:13245134..13245158 (25 bp)
ATTGCCAGAAAATGGCCTCCCAGCT
LOC_Os11g24170
OsAffx.18982.1.S1_at--431--10491Chr11:13245106..13245130 (25 bp)
TTACACGAGCTCTACGTGAGCAGTT
LOC_Os11g24170
OsAffx.18982.1.S1_at--1136--9011Chr11:13244992..13245016 (25 bp)
TGCAAGCTGCTACGTCTCTATTTTA
LOC_Os11g24170
OsAffx.18982.1.S1_at--451--2851Chr11:13243725..13243748 (24 bp)
AAGTCCTATTTACTATCGCCACTAC
LOC_Os11g24170
OsAffx.18982.1.S1_at--890--9891Chr11:13243715..13243739 (25 bp)
TACTATCGCCACTACAGTTGTTTTC
LOC_Os11g24170
Target Sequence 
AATGTGTTGGGCTGTCTGCTCTAGAGGGTTTGCATTCCCTCCCCAAACTTAAGCATCTACGGATTTTTCAATGCCCTAGT
TTGGCTAAAACATGGGGCCCTTCCTCAGTGGACAGGCCAGGTTTCTCTTTATATCTAGACAAGCTTGAAATTGATACCAC
TGTGTTATTTAACACAGAAGTTTGCAAGAAGCTTCCATCTCTTCGACATTTAGTGTTTTTCATGTTGTCAATCAAGGCTT
GTCCAGGAATTAAATCATTGCCAGAAAATGGCCTCCCAGCTTCCTTACACGAGCTCTACGTGAGCAGTTGCAGTGCAGAA
CTAAAGGAGCAGTGCAAGAAGACAAAAAATGTTAGATGTGTTTATGTTGATAGAAATGCAAGCAAATTCATAGTTATATG
CAAGCTGCTACGTCTCTATTTTAGGATCACCAAGCTGGGAGCATGGCAGCGATCACTATGGCTGCAATCAAGAACTGGGG
GAAGCAATGAGCTCATGGTCCTAACCAAAGTCCTATTTACTATCGCCACTACAGTTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis