Browse Element(s) Details


OsAffx.18981.1.S1_at

Description tigr:9639.m02126
TID=OsAffx.18981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g241308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24090NANA11+13194703..13197014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24100Os.26886.3.S1_x_at4/1111+13199778..13201705transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24110OsAffx.18980.1.S1_at11/1111+13204969..13205787hypothetical protein
LOC_Os11g24120Os.49884.1.S1_at10/1111+13207013..13209717expressed protein
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24160NANA11+13235940..13241490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24170OsAffx.18982.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24170Os.17696.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18981.1.S1_at--342--1991NONE
ACTCCGGCCCCGGAATCTTGATGAT
NONE
OsAffx.18981.1.S1_at--858--9271Chr11:13218746..13218766 (21 bp)
TCCGGCCCCGGAATCTTGATGATAC
LOC_Os11g24130
OsAffx.18981.1.S1_at--1059--4251Chr11:13218747..13219117 (25 bp)
CCGGCCCCGGAATCTTGATGATACG
LOC_Os11g24130
OsAffx.18981.1.S1_at--736--8391NONE
GGCCCCGGAATCTTGATGATACGGC
NONE
OsAffx.18981.1.S1_at--589--4171NONE
CCCCGGAATCTTGATGATACGGCGT
NONE
OsAffx.18981.1.S1_at--800--3931Chr11:13219673..13219697 (25 bp)
CGGCGTTCTTCCTACAATGATGTGG
LOC_Os11g24130
OsAffx.18981.1.S1_at--611--8371Chr11:13219674..13219698 (25 bp)
GGCGTTCTTCCTACAATGATGTGGT
LOC_Os11g24130
OsAffx.18981.1.S1_at--814--4631Chr11:13219675..13219699 (25 bp)
GCGTTCTTCCTACAATGATGTGGTG
LOC_Os11g24130
OsAffx.18981.1.S1_at--1049--6731Chr11:13219677..13219701 (25 bp)
GTTCTTCCTACAATGATGTGGTGCG
LOC_Os11g24130
OsAffx.18981.1.S1_at--924--3631Chr11:13219680..13219704 (25 bp)
CTTCCTACAATGATGTGGTGCGGGT
LOC_Os11g24130
OsAffx.18981.1.S1_at--649--4291Chr11:13219683..13219707 (25 bp)
CCTACAATGATGTGGTGCGGGTGAC
LOC_Os11g24130
Target Sequence 
ACTCCGGCCCCGGAATCTTGATGATACGGCGTTCTTCCTACAATGATGTGGTGCGGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis