Browse Element(s) Details


OsAffx.18980.1.S1_at

Description tigr:9639.m02124
TID=OsAffx.18980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2411011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24090NANA11+13194703..13197014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24100Os.26886.3.S1_x_at4/1111+13199778..13201705transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24110OsAffx.18980.1.S1_at11/1111+13204969..13205787hypothetical protein
LOC_Os11g24120Os.49884.1.S1_at10/1111+13207013..13209717expressed protein
LOC_Os11g24130OsAffx.18981.1.S1_at8/1111+13218707..13219852hypothetical protein
LOC_Os11g24140OsAffx.7183.1.S1_s_at10/1111+13222917..13224383Plastocyanin-like domain containing protein, expressed
LOC_Os11g24150OsAffx.20387.1.S1_x_at1/1111+13228721..13234780retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18980.1.S1_at--614--731Chr11:13205206..13205230 (25 bp)
ATGTTAATAGTTGCTGCCCACTTCT
LOC_Os11g24110
OsAffx.18980.1.S1_at--658--651Chr11:13205242..13205266 (25 bp)
ATGAACGCCTTTCTCTTTGGACGTG
LOC_Os11g24110
OsAffx.18980.1.S1_at--1025--2071Chr11:13205315..13205339 (25 bp)
ACATATCGGCTCTGGACAATCCTTT
LOC_Os11g24110
OsAffx.18980.1.S1_at--168--8151Chr11:13205393..13205417 (25 bp)
GGAAAGGTTACATGGCTCACCACAT
LOC_Os11g24110
OsAffx.18980.1.S1_at--169--291Chr11:13205438..13205462 (25 bp)
ATAGGGATCACGTTGCATTCCTCAA
LOC_Os11g24110
OsAffx.18980.1.S1_at--989--9911Chr11:13205485..13205509 (25 bp)
TACTGTGGAAAAACTGTCGGCCCGA
LOC_Os11g24110
OsAffx.18980.1.S1_at--609--8231Chr11:13205566..13205590 (25 bp)
GGCAAGCATCTGCTAGGCTCAGTAT
LOC_Os11g24110
OsAffx.18980.1.S1_at--960--8311Chr11:13205581..13205605 (25 bp)
GGCTCAGTATATTCGTTGTTGCACA
LOC_Os11g24110
OsAffx.18980.1.S1_at--546--9791Chr11:13205616..13205640 (25 bp)
TAAGCTAGCTACTGGTCAGCCGATC
LOC_Os11g24110
OsAffx.18980.1.S1_at--389--2771Chr11:13205711..13205735 (25 bp)
AAGACCCCACTTCTATGAGTTTCTG
LOC_Os11g24110
OsAffx.18980.1.S1_at--92--10132Chr11:13205724..13205748 (25 bp)
TATGAGTTTCTGTCACACCCTGAAA
LOC_Os11g24110
Target Sequence 
ATGTTAATAGTTGCTGCCCACTTCTGGTCTGACGCCATGAACGCCTTTCTCTTTGGACGTGGGTCGATGACTCCAACCTT
GATAGATGTCATCATGCTAACATCACTTAACATATCGGCTCTGGACAATCCTTTCCACCTCATGACCAAACCCACTTATC
AACTGAAAACCAAGGACGCCGGAGGTTGGAAAGGTTACATGGCTCACCACATGAAGACAAGCACCGTCACTGATAGGGAT
CACGTTGCATTCCTCAACATGTGGCTAGAACGCTTCATATACTGTGGAAAAACTGTCGGCCCGACCACAAATCCCCAGGC
GATAACAGAAGCACTTGTGTCTGGCCACTCCATCCCTCTGGGCAAGCATCTGCTAGGCTCAGTATATTCGTTGTTGCACA
ATGTATCGGCTAAGCTAGCTACTGGTCAGCCGATCACCAATCCTGGAGGACCTTGGTGGTTGATCAACTTATGGCTCAAT
CTTTATATGCACAAGACTCTCCAGCAAGACCCCACTTCTATGAGTTTCTGTCACACCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis