Browse Element(s) Details


Os.17820.1.A1_at

Description gb:BI813671
DB_XREF= gi:16579576
DB_XREF=M002D02
CLONE=M002D02
TID=Os.17820.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA damage repair protein (B1147B04.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3419011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34150OsAffx.11311.1.S1_x_at11/111+19158127..19158447hypothetical protein
LOC_Os01g34164NANA1+19167434..19167644NA
LOC_Os01g34180NANA1+19168229..19168432hypothetical protein
LOC_Os01g34190Os.17820.1.A1_at11/111+19175205..19178661G-patch domain containing protein, expressed
LOC_Os01g34200Os.28207.1.S1_at10/111+19180422..19184170rRNA processing protein, putative, expressed
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17820.1.A1_at--151--2271Chr01:19175868..19175892 (25 bp)
AAATCTGTCAACTTTGATGGCCCTC
LOC_Os01g34190
Os.17820.1.A1_at--410--1231Chr01:19175900..19175923 (24 bp)
AGTTCTGCTCCTCCGTAATATGGTT
LOC_Os01g34190
Os.17820.1.A1_at--176--7551Chr01:19178170..19178194 (25 bp)
GTGGCCTCAGAGTGTAGCAAGTACG
LOC_Os01g34190
Os.17820.1.A1_at--90--6691Chr01:19178202..19178226 (25 bp)
GTTGCGCGTGCTGATATTTGAGATC
LOC_Os01g34190
Os.17820.1.A1_at--468--10771Chr01:19178219..19178243 (25 bp)
TTGAGATCACTCAGGCGGACTTCCC
LOC_Os01g34190
Os.17820.1.A1_at--981--6211Chr01:19178251..19178275 (25 bp)
GAGGCCGTGAGGATCTTCATACTGT
LOC_Os01g34190
Os.17820.1.A1_at--15--731Chr01:19178305..19178329 (25 bp)
ATGATTGATCTGGAAGGGCGCTTCT
LOC_Os01g34190
Os.17820.1.A1_at--2--5351Chr01:19178407..19178431 (25 bp)
GAAGTTGCCGGCTTCGACTAGGCTG
LOC_Os01g34190
Os.17820.1.A1_at--543--7051Chr01:19178463..19178487 (25 bp)
GTAATCTTACGCTGGACTAATATGC
LOC_Os01g34190
Os.17820.1.A1_at--1100--4671Chr01:19178527..19178551 (25 bp)
GCGGTTGTTGCATTACTGTGCTGCA
LOC_Os01g34190
Os.17820.1.A1_at--1129--6271Chr01:19178594..19178618 (25 bp)
GATGTTTTTACCTGTGTGTGCTTGT
LOC_Os01g34190
Target Sequence 
AAATCTGTCAACTTTGATGGCCCTCCGACACGAGTTCTGCTCCTCCGTAATATGGTTGGTCCAGGTGAGGTTGATGNATG
AGCTGGAGGAAGAAGTGGCCTCAGAGTGTAGCAAGTACGGGACGGTGTTGCGCGTGCTGATATTTGAGATCACTCAGGCG
GACTTCCCCGCCGAAGAGGCCGTGAGGATCTTCATACTGTTTGAGAGGNCGGAAGAAGCAACCAAGGCGATGATTGATCT
GGAAGGGCGCTTCTTTGGCGGGCGGGTGGTGCGTGCCACNTTCTTTGATGAGGAGAGGTTTGGGAAGAACCAGCNTGCCC
CCATGCCAGGTGAAGTTGCCGGCTTCGACTAGGCTGNCAATTTTATGCAGCGGTAGCAAATGGAGATNGTAATCTTACGC
TGGACTAATATGCAGTTTNTCNTTTTTTTTTTCTTTTGCCGTAGATTGTTATGCGGTTGTTGCATTACTGTGCTGCAACT
AGACTAGAGCANATGCATGATGGTCCATTGTAATATTTAGATGTTTTTACCTGTGTGTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17820.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis