Browse Element(s) Details


Os.17856.1.S1_a_at

Description gb:AY373257.1
DB_XREF= gi:34809049
TID=Os.17856.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17856 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) starch synthase IVa precursor, mRNA, complete cds.
PROD=starch synthase IVa precursor
FL= gb:AK100976.1 gb:AK106541.1 gb:AY373257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5225011/11glycogen/starch synthases, ADP-glucose type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17856.1.S1_a_at--100--1691Chr01:30360472..30360491 (20 bp)
AGCCTTGTGGCCTTACTCAGATGAT
LOC_Os01g52250
Os.17856.1.S1_a_at--775--7891Chr01:30360118..30360142 (25 bp)
GGTTCTGTGCCAATTGTTCGACAAA
LOC_Os01g52250
Os.17856.1.S1_a_at--138--2391Chr01:30359984..30360008 (25 bp)
AAACTATACCTGTGGAGCTGCGGAA
LOC_Os01g52250
Os.17856.1.S1_a_at--1059--6591Chr01:30359757..30359781 (25 bp)
GATTGATTTCAGCTGGGATTCTCCA
LOC_Os01g52250
Os.17856.1.S1_a_at--947--6572Chr04:649898..649918 (21 bp)
GATTCTCCAGCTTCACAGTACGAAA
NONE
Os.17856.1.S1_a_at--155--391Chr01:30359710..30359734 (25 bp)
ATCAGAGTGCTGTTGCTCAGGCAAG
LOC_Os01g52250
Os.17856.1.S1_a_at--529--7631Chr01:30359685..30359709 (25 bp)
GGGAGCGGCTCAAACATAAACCTTT
LOC_Os01g52250
Os.17856.1.S1_a_at--753--7371Chr01:30359647..30359671 (25 bp)
GTGAGCTTAGATTCTCCCAAGCGCA
LOC_Os01g52250
Os.17856.1.S1_a_at--31--131Chr01:30359548..30359572 (25 bp)
ATTCACACATCGTGATCCTTGCTGT
LOC_Os01g52250
Os.17856.1.S1_a_at--388--10691Chr01:30359530..30359554 (25 bp)
TTGCTGTTGCCATTCCCGAAAGAAC
LOC_Os01g52250
Os.17856.1.S1_a_at--270--5031Chr01:30359463..30359487 (25 bp)
GCAGTCAGTGCACGGAACTAGTTCT
LOC_Os01g52250
Target Sequence 
AGCCTTGTGGCCTTACTCAGATGATAGCTATGAGATATGGTTCTGTGCCAATTGTTCGACAAACTGGTGGATTGTGTGAT
AGTGTTTTTGATTTTGATGATGAAACTATACCTGTGGAGCTGCGGAATGGCTTTACATTTGCTAGGACTGATGAGCAGGA
TCTAAGCAGTTGCTTGGAAAGGGCATTCAGCTACTACAGCAGAAAACCTATGGTTTGGAAACAGTTAGTGCAGAAGGATA
TGCAGATTGATTTCAGCTGGGATTCTCCAGCTTCACAGTACGAAAACCTTTATCAGAGTGCTGTTGCTCAGGCAAGGGGA
GCGGCTCAAACATAAACCTTTTCATGATGACATTGTGAGCTTAGATTCTCCCAAGCGCAGAGACAATCGTCAGTTTTATC
ATATCTGAACCAGGCATATGCTGAAGAAATATTGTTCTTCTCACATTCACAGAATTCACACATCGTGATCCTTGCTGTTG
CCATTCCCGAAAGAACTGAGAAAGAGTAGTCTTACAGTTGATCAAGATATTGCATTTTGCAGTCAGTGCACGGAACTAGT
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17856.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis