Browse Element(s) Details


Os.17868.1.S1_at

Description gb:AK066940.1
DB_XREF= gi:32976958
TID=Os.17868.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090D23, full insert sequence.
FL= gb:AK066940.1 gb:AK061875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0402011/11Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os11g0421010/11Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03960Os.53234.1.S1_at11/1112+1645425..16469714'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g04000Os.50938.1.S1_at10/1112+1657206..1659737Auxin efflux carrier component 3, putative, expressed
LOC_Os12g04010Os.54231.1.S1_at10/1112+1662836..1667934Mpp10 protein, expressed
LOC_Os12g04020Os.17868.1.S1_at11/1112+1670493..1674168Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os12g04030Os.27960.1.S1_a_at10/1112+1673702..1681675HEAT repeat family protein, expressed
LOC_Os12g04030Os.27960.1.S2_at5/1112+1673702..1681675HEAT repeat family protein, expressed
LOC_Os12g04040NANA12+1696203..1699494retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006551biological_processleucine metabolism
GO:0005739cellular_componentmitochondrion
GO:0004419molecular_functionhydroxymethylglutaryl-CoA lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17868.1.S1_at--255--10072Chr12:1673719..1673743 (25 bp)
TAGTGGACTCATCAGTGTCAGGACT
LOC_Os12g04020
Os.17868.1.S1_at--958--5732Chr12:1673740..1673764 (25 bp)
GACTGGGAGGCTGCCCATATGCAAA
LOC_Os12g04020
Os.17868.1.S1_at--71--4372Chr12:1673770..1673794 (25 bp)
CCACCGGCAATGTCGCGACGGAGGA
LOC_Os12g04020
Os.17868.1.S1_at--45--8112Chr12:1673792..1673816 (25 bp)
GGACGTTGTGTACATGCTCCATGGA
LOC_Os12g04020
Os.17868.1.S1_at--158--3272Chr12:1673843..1673867 (25 bp)
CAACAAGCTCATGGATGCTGGAGAT
LOC_Os12g04020
Os.17868.1.S1_at--1029--6552Chr12:1673865..1673889 (25 bp)
GATTACATCTCCAAGCATCTGGGAA
LOC_Os12g04020
Os.17868.1.S1_at--131--8212Chr12:1673886..1673910 (25 bp)
GGAAGGCAGTCAGGCTCCAAGACCA
LOC_Os12g04020
Os.17868.1.S1_at--419--2692Chr12:1673925..1673949 (25 bp)
AAGCTAACCACTTAAGTCCCTGATG
LOC_Os12g04020
Os.17868.1.S1_at--861--6472Chr12:1673982..1674006 (25 bp)
GATACATCGGTTGGCGTCAGTTTAA
LOC_Os12g04020
Os.17868.1.S1_at--1009--2612Chr12:1674043..1674067 (25 bp)
AACCGTCTCAATTTAGTCCCAATAT
LOC_Os12g04020
Os.17868.1.S1_at--1155--3012Chr12:1674136..1674161 (25 bp)
AATGCCCTTCATACAAAAACGTTCT
LOC_Os12g04020
Target Sequence 
TAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTT
GTGTACATGCTCCATGGACTGGGGATAGAGACCAATGTTGACCTCAACAAGCTCATGGATGCTGGAGATTACATCTCCAA
GCATCTGGGAAGGCAGTCAGGCTCCAAGACCACCACTGCTCTCCGCAAGCTAACCACTTAAGTCCCTGATGATCATAATA
GGGATTCAGAAAAGAAGNCCGAAGATACATCGGTTGGCGTCAGTTTAATGTTTTTACACAANTCATATGTGATTGTAACN
TGTAAACCGTCTCAATTTAGTCCCAATATGGGTGAAAGTAAACAGAAACCATATATGTATANACACATTTGTGTTTAANT
TCTTGGATTGAATAATCAATGCCCTTCATACAAAAACGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis