Browse Element(s) Details


Os.17902.1.S1_at

Description gb:AK111634.1
DB_XREF= gi:37988297
TID=Os.17902.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.17902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119H17, full insert sequence.
FL= gb:AK099223.1 gb:AK111634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0242011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein
LOC_Os05g02430Os.2987.3.S1_x_at1/115+788032..788677transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17902.1.S1_at--142--8191Chr05:780836..780860 (25 bp)
GGAAGCCGATACGAGCTGCTACGAC
LOC_Os05g02420
Os.17902.1.S1_at--594--7791Chr05:780890..780914 (25 bp)
GGTCTGGGAATTCTGCACCGACTAC
LOC_Os05g02420
Os.17902.1.S1_at--546--4231Chr05:780907..780931 (25 bp)
CCGACTACTCGCTGTGGAGGATCGA
LOC_Os05g02420
Os.17902.1.S1_at--89--2751Chr05:780948..780972 (25 bp)
AAGAAGATGCTCGATGCCTCGCAAT
LOC_Os05g02420
Os.17902.1.S1_at--1133--1811Chr05:780999..781023 (25 bp)
ACGCCTTAATTCAATTGCTGCTCTT
LOC_Os05g02420
Os.17902.1.S1_at--226--5791Chr05:781048..781072 (25 bp)
GACGACGACTCTCATCATCTGATGA
LOC_Os05g02420
Os.17902.1.S1_at--887--231Chr05:781089..781113 (25 bp)
ATATTTGCACTGCATATCCTTGCAT
LOC_Os05g02420
Os.17902.1.S1_at--110--10151Chr05:781103..781127 (25 bp)
TATCCTTGCATCTGTCTACTGTAAT
LOC_Os05g02420
Os.17902.1.S1_at--602--5091Chr05:781141..781165 (25 bp)
GCACGTATTATGCATTGCTTGTCAG
LOC_Os05g02420
Os.17902.1.S1_at--454--9071Chr05:781156..781180 (25 bp)
TGCTTGTCAGACAACTCTGCTTTAT
LOC_Os05g02420
Os.17902.1.S1_at--985--6452Chr05:781200..781224 (25 bp)
GATCAATCAGCATGCCTAGCTTGTG
LOC_Os05g02420
Target Sequence 
GGAAGCCGATACGAGCTGCTACGACGCGGCGGCGATGGCCTCGCCGCCGTCGCCGGTCTGGGAATTCTGCACCGACTACT
CGCTGTGGAGGATCGACGACGAGGAGTACTACAAGAAGATGCTCGATGCCTCGCAATAGTACTACTCAAATTGCAAACAA
GCAACGCCTTAATTCAATTGCTGCTCTTAGCTTAATTAGCTGACGATCGATCGACGACGACTCTCATCATCTGATGAACG
AACTGCGAAATCTATATTTGCACTGCATATCCTTGCATCTGTCTACTGTAATTACACCTGATGATGCACGTATTATGCAT
TGCTTGTCAGACAACTCTGCTTTATATATATCTAGCTATAGCTTGATCAATCAGCATGCCTAGCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis