Browse Element(s) Details


Os.18082.1.S1_at

Description gb:AK101603.1
DB_XREF= gi:32986812
TID=Os.18082.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051K20, full insert sequence.
FL= gb:AK101603.1 gb:AK064022.1 gb:AK102857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5133011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51290Os.47463.1.S1_x_at5/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.14491.2.S1_x_at4/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51310NANA3+29304065..29309694retrotransposon protein, putative, unclassified
LOC_Os03g51320NANA3+29310848..29314138retrotransposon protein, putative, unclassified
LOC_Os03g51330Os.18082.1.S1_at11/113+29321280..29323611GRAS family transcription factor containing protein, expressed
LOC_Os03g51340OsAffx.13457.1.S1_at11/113+29326638..29328582hypothetical protein
LOC_Os03g51350Os.54997.1.S1_at11/113+29336765..29338616expressed protein
LOC_Os03g51360NANA3+29340775..29343820retrotransposon protein, putative, unclassified
LOC_Os03g51380Os.27392.1.S1_at11/113+29348210..29351926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18082.1.S1_at--38--3451Chr03:29322854..29322878 (25 bp)
CAGTCCAGCAGTGGTCACACTTGGA
LOC_Os03g51330
Os.18082.1.S1_at--480--4391Chr03:29322924..29322948 (25 bp)
GCCAATGCGTTGAGCTATTACCGGT
LOC_Os03g51330
Os.18082.1.S1_at--356--151Chr03:29322940..29322964 (25 bp)
ATTACCGGTCATTGTTCGAGTCGCT
LOC_Os03g51330
Os.18082.1.S1_at--997--7971Chr03:29322965..29322989 (25 bp)
GGATGTGGCAATGACCCGGGACTCA
LOC_Os03g51330
Os.18082.1.S1_at--837--5051Chr03:29323087..29323111 (25 bp)
GCAGCAGCGAGTGGCAGACCCTGAT
LOC_Os03g51330
Os.18082.1.S1_at--1000--9171Chr03:29323135..29323159 (25 bp)
TGCCGCTCAGCAACTATGCCAGGAG
LOC_Os03g51330
Os.18082.1.S1_at--324--911Chr03:29323162..29323186 (25 bp)
AGGCTGATCTTTTGCTCTGGAACTA
LOC_Os03g51330
Os.18082.1.S1_at--1010--10211Chr03:29323203..29323227 (25 bp)
TATTCACTTGTTGAGTTGCCACCGG
LOC_Os03g51330
Os.18082.1.S1_at--886--4031Chr03:29323228..29323252 (25 bp)
CGTTCTTGTCCTTGGCATGGGAGAA
LOC_Os03g51330
Os.18082.1.S1_at--432--2391Chr03:29323251..29323275 (25 bp)
AAACGGCCATTGCTTACTGTGTCTG
LOC_Os03g51330
Os.18082.1.S1_at--413--5051Chr03:29323369..29323393 (25 bp)
GCAGCTTTTGTTGTAGTTTCCTCCA
LOC_Os03g51330
Target Sequence 
CAGTCCAGCAGTGGTCACACTTGGAGAGTACGAGGTCAGCCTGAACCGAGCTGGGTTCGTCGACCGGTTCGCCAATGCGT
TGAGCTATTACCGGTCATTGTTCGAGTCGCTGGATGTGGCAATGACCCGGGACTCACCGGAGAGGGTGAGGGTGGAGCGT
TGGATGTTCGGGGAGCGAATTCAGAGGGCCGTCGGGCCGGAGGAAGGCGCAGACCGGACGGAGAGGATGGCCGGCAGCAG
CGAGTGGCAGACCCTGATGGAGTGGTGCGGCTTCGAGCCCGTGCCGCTCAGCAACTATGCCAGGAGCCAGGCTGATCTTT
TGCTCTGGAACTATGATTCCAAGTACAAGTATTCACTTGTTGAGTTGCCACCGGCGTTCTTGTCCTTGGCATGGGAGAAA
CGGCCATTGCTTACTGTGTCTGCTTGGAGGTGAGGGTAGTTTTTTTGGGAGTATTTGGGGGAATGTGTGGCGTTGTGATA
GAACCTGGGAGGAAATAGTTAGGAGAAATCATTTTGCAGCTTTTGTTGTAGTTTCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis