Browse Element(s) Details


OsAffx.13457.1.S1_at

Description tigr:9631.m05017
TID=OsAffx.13457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5134011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51290Os.47463.1.S1_x_at5/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.14491.2.S1_x_at4/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51310NANA3+29304065..29309694retrotransposon protein, putative, unclassified
LOC_Os03g51320NANA3+29310848..29314138retrotransposon protein, putative, unclassified
LOC_Os03g51330Os.18082.1.S1_at11/113+29321280..29323611GRAS family transcription factor containing protein, expressed
LOC_Os03g51340OsAffx.13457.1.S1_at11/113+29326638..29328582hypothetical protein
LOC_Os03g51350Os.54997.1.S1_at11/113+29336765..29338616expressed protein
LOC_Os03g51360NANA3+29340775..29343820retrotransposon protein, putative, unclassified
LOC_Os03g51380Os.27392.1.S1_at11/113+29348210..29351926expressed protein
LOC_Os03g51390Os.8052.1.S1_at7/113+29352608..29353510expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13457.1.S1_at--268--2411Chr03:29327530..29327554 (25 bp)
AAACAGGACACAGGCCTTTCTTTGG
LOC_Os03g51340
OsAffx.13457.1.S1_at--437--5611Chr03:29327536..29327560 (25 bp)
GACACAGGCCTTTCTTTGGGAAACA
LOC_Os03g51340
OsAffx.13457.1.S1_at--758--2411Chr03:29327566..29327590 (25 bp)
AAAAATGCTAGAACCAGCTGCAATA
LOC_Os03g51340
OsAffx.13457.1.S1_at--1037--1711Chr03:29327578..29327602 (25 bp)
ACCAGCTGCAATATCGCTTAACAAG
LOC_Os03g51340
OsAffx.13457.1.S1_at--581--251Chr03:29327588..29327711 (25 bp)
ATATCGCTTAACAAGATCGTCTTAA
LOC_Os03g51340
OsAffx.13457.1.S1_at--747--6391Chr03:29327701..29327725 (25 bp)
GATCGTCTTAAATCATTACATGGAA
LOC_Os03g51340
OsAffx.13457.1.S1_at--185--2311Chr03:29327725..29327749 (25 bp)
AAATGGAACACCTACTTTCGCAGCT
LOC_Os03g51340
OsAffx.13457.1.S1_at--70--5071Chr03:29327744..29327768 (25 bp)
GCAGCTTCGCTTCAACAGATCAATG
LOC_Os03g51340
OsAffx.13457.1.S1_at--148--4431Chr03:29327771..29327795 (25 bp)
GCCAGGGCGTCATTTTGTTTACCGA
LOC_Os03g51340
OsAffx.13457.1.S1_at--71--10811Chr03:29327785..29328155 (25 bp)
TTGTTTACCGATGGACAAGTCCCCA
LOC_Os03g51340
OsAffx.13457.1.S1_at--23--10031Chr03:29328384..29328408 (25 bp)
TAGAGATCCACGAGCGGTCGTGGCA
LOC_Os03g51340
Target Sequence 
AAACAGGACACAGGCCTTTCTTTGGGAAACAGGAAAAAAAATGCTAGAACCAGCTGCAATATCGCTTAACAAGATCGTCT
TAAATCATTACATGGAAAATGGAACACCTACTTTCGCAGCTTCGCTTCAACAGATCAATGCAGCCAGGGCGTCATTTTGT
TTACCGATGGACAAGTCCCCACCTACCGCCGATTTCTCTCCTCTCCCCACCTACCGCCATCTGTCCTCACACTCACCGGC
GCCGGCGCACCGGGTGGGGAAGCCTAGAAGGGCGGCGGTCGAGGAGCTCCTTGGGCGGCACGGCGACGAGCTCCCTGGCG
GCACCGGTCGCTGCCTCTCTGTCAACCCGTCGACGACGCCACCTCCGCTCGAGATCCGCCACTGGGGCGATGGCCGGCGG
CGTAGAGATCCACGAGCGGTCGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis