Browse Element(s) Details


Os.8052.1.S1_at

Description gb:AK101260.1
DB_XREF= gi:32986469
TID=Os.8052.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032I06, full insert sequence.
FL= gb:AK101260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g513907/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51340OsAffx.13457.1.S1_at11/113+29326638..29328582hypothetical protein
LOC_Os03g51350Os.54997.1.S1_at11/113+29336765..29338616expressed protein
LOC_Os03g51360NANA3+29340775..29343820retrotransposon protein, putative, unclassified
LOC_Os03g51380Os.27392.1.S1_at11/113+29348210..29351926expressed protein
LOC_Os03g51390Os.8052.1.S1_at7/113+29352608..29353510expressed protein
LOC_Os03g51410NANA3+29361191..29361652hypothetical protein
LOC_Os03g51420NANA3+29362352..29362705hypothetical protein
LOC_Os03g51430Os.19596.1.S1_at11/113+29371755..29376000CRAL/TRIO domain containing protein, expressed
LOC_Os03g51440OsAffx.3575.1.S1_at11/113+29376948..29380996Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8052.1.S1_at--481--911Chr03:29353039..29353063 (25 bp)
AGGCTCATCGAGTACGTGCGGTCCA
LOC_Os03g51390
Os.8052.1.S1_at--657--6991Chr03:29353028..29353052 (25 bp)
GTACGTGCGGTCCAGGAACAAGTCC
LOC_Os03g51390
Os.8052.1.S1_at--714--3971Chr03:29352822..29352846 (25 bp)
CGGTGCAGGGCTTCTACTAGCTCGC
LOC_Os03g51390
Os.8052.1.S1_at--128--5071Chr03:29352752..29352776 (25 bp)
GCAGCTCGTCGCACATGTGTACAAT
LOC_Os03g51390
Os.8052.1.S1_at--1116--4831Chr03:29352722..29352746 (25 bp)
GCTAGAATTCATGGCGTGTCACTCG
LOC_Os03g51390
Os.8052.1.S1_at--476--9251Chr03:29352692..29352716 (25 bp)
TCCTCTTCTTCGTTCCAATTTTTCT
LOC_Os03g51390
Os.8052.1.S1_at--358--9271Chr03:29352638..29352662 (25 bp)
TCCTCCTCCTTTGTGTAATGTCGAT
LOC_Os03g51390
Os.8052.1.S1_at--601--2271Chr03:29352592..29352616 (25 bp)
AAATCTCTCAAATTTGGCTTGCTTT
NONE
Os.8052.1.S1_at--676--3631Chr03:29352575..29352599 (25 bp)
CTTGCTTTTGGCCACTTGTATTTTG
NONE
Os.8052.1.S1_at--134--6591Chr03:29352549..29352573 (25 bp)
GTTGGGCTAAGTATCAACCTTCCCA
NONE
Os.8052.1.S1_at--768--3171Chr03:29352535..29352559 (25 bp)
CAACCTTCCCAACGTAATGTACTGT
NONE
Target Sequence 
AGGCTCATCGAGTACGTGCGGTCCAGGAACAAGTCCGGCGNCGNAGNAGGCGNCGNCGGCGTGGCCGCCGGGTGCAGNTC
CTCCGACGGNGACTCCAAGAGCTCCGACGGCGAGAAGGAGGCCGAGGTCGACGGCGAGGACGGCGGCGGCAGCNAGGACA
AGAAGGACAAGAAGAAGAAGCGCTCGTCGTGGCTCCCCGATCCCGACCGCCGGTGGCCGGTGCAGGGCTTCTACTAGCTC
GCCGTTGCACGCCATGGCTCTCACCGTCCCGTCGGCTCGTCGTCGCCGCAGCTCGTCGCACATGTGTACAATTCGGTGCT
AGAATTCATGGCGTGTCACTCGTGTCTTCCTCTTCTTCGTTCCAATTTTTCTTCCATTTTTTTCTTTCTTTCTGTTTTTT
CTCCTCCTCCTTTGTGTAATGTCGATGTGAAGGAAGACGACGAGATAAAATCTCTCAAATTTGGCTTGCTTTTGGCCACT
TGTATTTTGGGTTGGGCTAAGTATCAACCTTCCCAACGTAATGTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis