Browse Element(s) Details


OsAffx.3575.1.S1_at

Description tigr:9631.m05025
TID=OsAffx.3575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5144011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51390Os.8052.1.S1_at7/113+29352608..29353510expressed protein
LOC_Os03g51410NANA3+29361191..29361652hypothetical protein
LOC_Os03g51420NANA3+29362352..29362705hypothetical protein
LOC_Os03g51430Os.19596.1.S1_at11/113+29371755..29376000CRAL/TRIO domain containing protein, expressed
LOC_Os03g51440OsAffx.3575.1.S1_at11/113+29376948..29380996Leucine Rich Repeat family protein, expressed
LOC_Os03g51450NANA3+29383180..29383539hypothetical protein
LOC_Os03g51470Os.10468.1.S1_at11/113+29401687..29404169expressed protein
LOC_Os03g51479Os.55664.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.2.S1_x_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479Os.31771.1.S1_at11/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_at1/113+29405538..29411288Maf-like protein, expressed
LOC_Os03g51479OsAffx.5618.1.S1_x_at1/113+29405538..29411288Maf-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3575.1.S1_at--588--5291Chr03:29377811..29377835 (25 bp)
GAAGGCTAGGTATCAGTGCATCAAA
LOC_Os03g51440
OsAffx.3575.1.S1_at--1134--8831Chr03:29377762..29377786 (25 bp)
TGATCACACTCTGCGCTACATTAAT
LOC_Os03g51440
OsAffx.3575.1.S1_at--369--6651Chr03:29377647..29377671 (25 bp)
GTTGCAAAGTCCTGCTTGAATCCTA
LOC_Os03g51440
OsAffx.3575.1.S1_at--1072--5191Chr03:29377630..29377654 (25 bp)
GAATCCTAGGTCTTCTAAACGGCCG
LOC_Os03g51440
OsAffx.3575.1.S1_at--513--1231Chr03:29377552..29377576 (25 bp)
AGATAACGGCGGCTCTAGCTCAGCC
LOC_Os03g51440
OsAffx.3575.1.S1_at--1033--4011Chr03:29377527..29377551 (25 bp)
CGTTTGAGAGCCACGTCATCACGGG
LOC_Os03g51440
OsAffx.3575.1.S1_at--838--3011Chr03:29377494..29377518 (25 bp)
AATGCTGCATTCTTCGGGAGTTGGC
LOC_Os03g51440
OsAffx.3575.1.S1_at--82--8491Chr03:29377473..29377497 (25 bp)
TGGCGGCATAGCTCGTCTGATATAG
LOC_Os03g51440
OsAffx.3575.1.S1_at--196--4811Chr03:29377463..29377487 (25 bp)
GCTCGTCTGATATAGGTCCTTCAAG
LOC_Os03g51440
OsAffx.3575.1.S1_at--747--5991Chr03:29377413..29377437 (25 bp)
GAGACGATCAAATCATCCGGAGGGA
LOC_Os03g51440
OsAffx.3575.1.S1_at--886--9271Chr03:29377398..29377422 (25 bp)
TCCGGAGGGAGCAATGGTGACCATT
LOC_Os03g51440
Target Sequence 
GAAGGCTAGGTATCAGTGCATCAAATGATGCTGCAACGAATGAGTGGCTTGATCACACTCTGCGCTACATTAATATTTAT
GAGAAAGAGCTCATGAGCAAGATCATTGATCCATCACTTATAATTGATGAGGACCATCTGGAGGAAGTCTGGGCAATGGC
AATTGTTGCAAAGTCCTGCTTGAATCCTAGGTCTTCTAAACGGCCGCCGATGAAATATATTCTAAAAGCACTAGAGAATC
CGTTGAAGGTGGTGAGGGAAGATAACGGCGGCTCTAGCTCAGCCCGTTTGAGAGCCACGTCATCACGGGGATCATGGAAT
GCTGCATTCTTCGGGAGTTGGCGGCATAGCTCGTCTGATATAGGTCCTTCAAGGGATGACAACTTGTTGAAACGCTCAGA
GACGATCAAATCATCCGGAGGGAGCAATGGTGACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis