Browse Element(s) Details


Os.54997.1.S1_at

Description gb:AK107276.1
DB_XREF= gi:32992485
TID=Os.54997.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A05, full insert sequence.
FL= gb:AK107276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5135011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51320NANA3+29310848..29314138retrotransposon protein, putative, unclassified
LOC_Os03g51330Os.18082.1.S1_at11/113+29321280..29323611GRAS family transcription factor containing protein, expressed
LOC_Os03g51340OsAffx.13457.1.S1_at11/113+29326638..29328582hypothetical protein
LOC_Os03g51350Os.54997.1.S1_at11/113+29336765..29338616expressed protein
LOC_Os03g51360NANA3+29340775..29343820retrotransposon protein, putative, unclassified
LOC_Os03g51380Os.27392.1.S1_at11/113+29348210..29351926expressed protein
LOC_Os03g51390Os.8052.1.S1_at7/113+29352608..29353510expressed protein
LOC_Os03g51410NANA3+29361191..29361652hypothetical protein
LOC_Os03g51420NANA3+29362352..29362705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54997.1.S1_at--432--7631Chr03:29337213..29337237 (25 bp)
GGGACGTGATGACCCACTCTTTCGG
LOC_Os03g51350
Os.54997.1.S1_at--967--7431Chr03:29337281..29337305 (25 bp)
GTGTACGGACAGAACGACCCGGTGT
LOC_Os03g51350
Os.54997.1.S1_at--138--1471Chr03:29338196..29338220 (25 bp)
AGAAGGCGCGCCACCATAAGGACGA
LOC_Os03g51350
Os.54997.1.S1_at--1051--2711Chr03:29338222..29338246 (25 bp)
AAGCACGCGACCTAAGCCTAGCAGT
LOC_Os03g51350
Os.54997.1.S1_at--967--9751Chr03:29338266..29338290 (25 bp)
TAATCGTAGTTTAGTCGGGCATGAC
LOC_Os03g51350
Os.54997.1.S1_at--1074--571Chr03:29338318..29338342 (25 bp)
ATCCACGTTGCCCTATCTTTGATGG
LOC_Os03g51350
Os.54997.1.S1_at--866--6331Chr03:29338377..29338401 (25 bp)
GATGCATTTGTTTTATTCCTTAGAT
LOC_Os03g51350
Os.54997.1.S1_at--865--9911Chr03:29338444..29338468 (25 bp)
TACTGTGAGTTCTCCAGCGCTTGTG
LOC_Os03g51350
Os.54997.1.S1_at--584--1651Chr03:29338459..29338483 (25 bp)
AGCGCTTGTGTCTCCTGGTGTGTGT
LOC_Os03g51350
Os.54997.1.S1_at--1099--4033Chr11:24707247..24707271 (23 bp)
CGATTCATATATATACTCCCTCCTC
NONE
Os.54997.1.S1_at--565--9291Chr03:29338528..29338552 (25 bp)
TCCGTCATCCCTTCTATAGGATTTT
LOC_Os03g51350
Target Sequence 
GGGACGTGATGACCCACTCTTTCGGGGAGGGATACTAGACGCGGTCGGACGAGGAAGGGTTCGGTGGCGTGTACGGACAG
AACGACCCGGTGTTCAACCCTGGGACCGAGGTGCACCCCAGCCACCCTGAGTACGACACGTCGCAGGGGTCGGAGGTGAA
GGAGAAGGAGAAGGCGCGCCACCATAAGGACGACAAGCACGCGACCTAAGCCTAGCAGTTGGGGGCTGGATTAGGTCCTA
ATCGTAGTTTAGTCGGGCATGACGGGGATCACCCCCATCATCACCTGTGCATCCACGTTGCCCTATCTTTGATGGGCACT
AGTTGTATCTTTTGCTTCTGAACTGTTTTGATGCATTTGTTTTATTCCTTAGATGTGATGTAAAATCTCTACAGTACTTA
ATTAGCTATGTACTGGTACTGTGAGTTCTCCAGCGCTTGTGTCTCCTGGTGTGTGTGATCATGTAATGATGAGTCGATTC
ATATATATACTCCCTCCTCCTCCGTCATCCCTTCTATAGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis