Browse Element(s) Details


Os.1814.3.A1_at

Description gb:AK101414.1
DB_XREF= gi:32986623
TID=Os.1814.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1814 (NCBI UniGene Cluster)
UG_TITLE=MRNA for OsGA2ox1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037L04, full insert sequence.
FL= gb:AK101414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0668011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1814.3.A1_at--736--7811Chr05:3442171..3442195 (25 bp)
GGTCTTTGACTGATTGATGGCTGCA
LOC_Os05g06680
Os.1814.3.A1_at--713--8271Chr05:3442116..3442140 (25 bp)
GGCATGCCTGCCTGATGAGTTAGAA
LOC_Os05g06680
Os.1814.3.A1_at--386--6891Chr05:3442073..3442097 (25 bp)
GTATATGTGTATGCCTCTGTGCTTG
LOC_Os05g06680
Os.1814.3.A1_at--51--7931Chr05:3441912..3441936 (25 bp)
GGATTGGCCATACTTTTTTCCACTG
LOC_Os05g06680
Os.1814.3.A1_at--885--8151Chr05:3441881..3441905 (25 bp)
GGAAAGACCCATCAGTGCGTGGATC
LOC_Os05g06680
Os.1814.3.A1_at--728--7511Chr05:3441863..3441887 (25 bp)
GTGGATCACAAGTATCACTGCCCCT
LOC_Os05g06680
Os.1814.3.A1_at--164--7631Chr05:3441821..3441845 (25 bp)
GGGACATTTCATTTTATCTTACCAT
LOC_Os05g06680
Os.1814.3.A1_at--37--2791Chr05:3441795..3441819 (25 bp)
AAGAGGACTCCTTGCATGTGTGCCT
LOC_Os05g06680
Os.1814.3.A1_at--454--791Chr05:3441780..3441804 (25 bp)
ATGTGTGCCTCCTTTCTTTTGTTTG
LOC_Os05g06680
Os.1814.3.A1_at--105--7571Chr05:3441722..3441746 (25 bp)
GGGCCTGGATCATTTTATTCTCATC
LOC_Os05g06680
Os.1814.3.A1_at--907--4531Chr05:3441673..3441697 (25 bp)
GCCCCTGTCTGTTGCATTTGACAAA
LOC_Os05g06680
Target Sequence 
GGTCTTTGACTGATTGATGGCTGCAGCAAATCAAAAGCTGCACCCACCCTCCCTCGGCATGCCTGCCTGATGAGTTAGAA
AAGATGATACACTGATGGGTATATGTGTATGCCTCTGTGCTTGTGCACCACCATCTACAAGACGTGATATATTCGTTTCT
TGTGAATCTTGTGATGCATGGATAGGCCACAGAATCAGCAGTACATCATGCAGCCGAGGGGTGACAAATTTTCCAATGGG
CAAAAATGTGTTGTTGACAGGATTGGCCATACTTTTTTCCACTGCTCCATGGAAAGACCCATCAGTGCGTGGATCACAAG
TATCACTGCCCCTGCCACTACACAACCTCTGGGACATTTCATTTTATCTTACCATAAAGAGGACTCCTTGCATGTGTGCC
TCCTTTCTTTTGTTTGGCTTTATATGGATAGCATAGATATGCTCTTTAGGGGCCTGGATCATTTTATTCTCATCAGACAT
GTGTGTACTTCCATGTGGGCCCCTGTCTGTTGCATTTGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1814.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis