Browse Element(s) Details


Os.18335.2.S1_x_at

Description gb:AK068551.1
DB_XREF= gi:32978568
TID=Os.18335.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155M04, full insert sequence.
FL= gb:AK068551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3415011/11Outer membrane lipoprotein blc precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34110NANA8+21255076..21259042retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18335.2.S1_x_at--1140--4811Chr08:21274971..21274995 (25 bp)
GCTCAAGGTCAAGTTCTACGTGCCC
LOC_Os08g34150
Os.18335.2.S1_x_at--424--2011Chr08:21275027..21275051 (25 bp)
ACTACTGGGTGCTCCACGTCGACGA
LOC_Os08g34150
Os.18335.2.S1_x_at--600--2531Chr08:21275089..21275208 (25 bp)
AACTACCTCTGGATCTTGTGCAGGC
LOC_Os08g34150
Os.18335.2.S1_x_at--561--7731Chr08:21275345..21275369 (25 bp)
GGTGTGGTGGATCAAGTCCCTCTTC
LOC_Os08g34150
Os.18335.2.S1_x_at--61--3231Chr08:21275357..21275381 (25 bp)
CAAGTCCCTCTTCGGCAGGTAGGTA
LOC_Os08g34150
Os.18335.2.S1_x_at--1081--1391Chr08:21275410..21275434 (25 bp)
AGACTCCAGAGCTTGATGCCACCAT
LOC_Os08g34150
Os.18335.2.S1_x_at--950--6351Chr08:21275424..21275448 (25 bp)
GATGCCACCATGATCGTGTACATTA
LOC_Os08g34150
Os.18335.2.S1_x_at--785--10211Chr08:21275450..21275474 (25 bp)
TATTGCTTCAGTTCAAAGGCTAGTT
LOC_Os08g34150
Os.18335.2.S1_x_at--1003--7751Chr08:21275475..21275499 (25 bp)
GGTGAATTCTGTTCAACTCGTCGGC
LOC_Os08g34150
Os.18335.2.S1_x_at--829--7351Chr08:21275520..21275544 (25 bp)
GTGAACCTGTTCGTTTTCTGGATTA
LOC_Os08g34150
Os.18335.2.S1_x_at--31--9991Chr08:21275543..21275567 (25 bp)
TAGTGTTTAATGTGTCCGTTTTGTG
LOC_Os08g34150
Target Sequence 
GCTCAAGGTCAAGTTCTACGTGCCCCCGTTCCTCCCCATCTTCCCCGTCGTCGGCGACTACTGGGTGCTCCACGTCGACG
ACGCCTACTCCTACGCGCTCGTCGGCCAGCCCTCCCTCAACTACCTCTGGATCTTGTGCAGGCAGCCGCACATGGACGAG
GAGGTGTACGGCCAGCTGGTGGAGAGGGCCAAGGAGGAGGGGTACGACGTGAGCAAGCTGAAGAAGACGGCGCACCCGGA
CCCGCCGCCGGAGACCGAGCAGAGCGCCGGCGACCGCGGGGTGTGGTGGATCAAGTCCCTCTTCGGCAGGTAGGTAGGTG
GTCGTGCCAGCTGCCATGCCGTCCAGACTCCAGAGCTTGATGCCACCATGATCGTGTACATTATTATTGCTTCAGTTCAA
AGGCTAGTTGGTGAATTCTGTTCAACTCGTCGGCCTCGGGGAATCCCCCAAGCTGTGAACCTGTTCGTTTTCTGGATTAG
TGTTTAATGTGTCCGTTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18335.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis